Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.8e-149 531.9 276 100.0
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.4e-140 503.1 276 95.3
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 4.0e-119 431.8 280 83.2
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 8.9e-119 430.6 276 84.1
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 4.1e-84 315.5 263 63.9
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 2.1e-80 303.1 279 61.3
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 9.0e-79 297.7 276 59.8
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 9.0e-79 297.7 274 61.3
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.6e-78 296.2 270 60.4
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 2.6e-78 296.2 266 65.0
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.3e-77 293.9 263 63.1
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 2.9e-77 292.7 257 61.9
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.8e-77 292.4 263 63.5
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 4.2e-76 288.9 277 59.6
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 5.4e-76 288.5 267 59.6
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 7.1e-76 288.1 281 58.4
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 4.6e-75 285.4 277 61.0
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 6.0e-75 285.0 247 62.3
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 7.8e-75 284.6 279 59.9
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 2.3e-74 283.1 279 59.5
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 3.0e-74 282.7 238 66.0
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 4.3e-73 278.9 241 64.3
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 5.6e-73 278.5 281 58.0
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 7.3e-73 278.1 217 66.4
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 2.8e-72 276.2 277 58.1
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 4.8e-72 275.4 281 56.2
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 4.8e-72 275.4 247 62.3
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 4.8e-72 275.4 279 56.6
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 6.2e-72 275.0 278 56.5
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 4.0e-71 272.3 281 56.9
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 6.9e-71 271.6 276 56.5
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 6.9e-71 271.6 213 65.3
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 1.5e-70 270.4 276 56.2
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 3.4e-70 269.2 278 56.1
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 3.4e-70 269.2 285 54.7
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 4.5e-70 268.9 189 70.4
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 7.6e-70 268.1 269 56.5
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 7.6e-70 268.1 214 67.3
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.3e-69 267.3 197 69.0
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 1.3e-69 267.3 281 55.5
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.7e-69 266.9 265 58.5
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.7e-69 266.9 177 74.6
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 2.2e-69 266.5 205 67.3
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 2.9e-69 266.2 191 69.6
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 3.8e-69 265.8 276 56.2
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 6.4e-69 265.0 268 56.7
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 8.4e-69 264.6 210 64.8
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 8.4e-69 264.6 189 70.4
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 1.1e-68 264.2 285 56.1
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 1.4e-68 263.8 280 55.4
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.9e-68 263.5 254 57.1
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 1.9e-68 263.5 269 54.6
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.4e-68 263.1 189 69.8
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 3.2e-68 262.7 212 61.3
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 4.2e-68 262.3 203 65.0
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 4.2e-68 262.3 206 65.5
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 5.4e-68 261.9 247 57.9
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 7.1e-68 261.5 240 59.2
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 4.6e-67 258.8 265 53.2
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 7.9e-67 258.1 248 56.9
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 1.0e-66 257.7 265 56.2
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.8e-66 256.9 255 56.1
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 3.0e-66 256.1 209 61.7
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 6.7e-66 255.0 279 55.9
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.1e-65 254.2 212 60.4
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.5e-65 253.8 284 54.2
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 1.9e-65 253.4 215 59.5
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 4.3e-65 252.3 254 57.1
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 9.6e-65 251.1 283 53.4
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 1.3e-64 250.8 212 59.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.6e-64 250.4 216 61.1
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 2.1e-64 250.0 283 52.7
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 3.7e-64 249.2 212 59.9
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 4.8e-64 248.8 244 55.3
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 6.2e-64 248.4 212 59.4
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 6.2e-64 248.4 263 54.0
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 1.1e-63 247.7 212 59.9
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.1e-63 247.7 297 52.9
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 2.4e-63 246.5 268 54.1
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 4.0e-63 245.7 212 59.0
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 2.0e-62 243.4 247 51.8
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 2.0e-62 243.4 269 50.2
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 7.6e-62 241.5 269 52.8
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 1.3e-61 240.7 277 50.9
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 2.2e-61 240.0 276 51.8
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 6.4e-61 238.4 197 61.9
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 6.4e-61 238.4 191 60.7
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 1.1e-60 237.7 191 64.9
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.6e-56 223.8 218 57.8
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 3.7e-56 222.6 154 74.7
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 8.2e-56 221.5 167 67.7
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 5.3e-55 218.8 151 72.2
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.2e-54 217.6 205 61.5
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 2.6e-54 216.5 240 51.7
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.9e-53 213.0 153 71.9
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 7.1e-52 208.4 191 56.0
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.7e-51 206.5 144 72.2
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 3.7e-48 196.1 169 65.1
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 4.8e-48 195.7 177 56.5
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 6.3e-48 195.3 154 63.6
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 8.2e-48 194.9 153 65.4
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 5.9e-46 188.7 174 61.5
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 6.5e-45 185.3 144 63.9
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.0e-42 177.9 177 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 3.0e-42 176.4 191 47.1
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 3.9e-42 176.0 143 62.2
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 2.5e-41 173.3 130 69.2
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 1.4e-39 167.5 189 46.6
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.1e-36 157.9 154 56.5
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 9.4e-36 154.8 199 44.7
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.3e-34 150.2 114 65.8
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 2.4e-31 140.2 261 35.2
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 7.0e-23 112.1 82 73.2
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.0e-22 110.5 179 36.9
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.0e-22 110.5 179 36.9
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 3.8e-21 106.3 123 41.5
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 6.5e-21 105.5 99 53.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 8.5e-21 105.1 156 44.2
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 1.4e-15 87.8 153 36.6
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 7.0e-15 85.5 249 31.7
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 9.1e-15 85.1 104 49.0
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.3e-13 81.3 100 49.0
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 5.7e-09 65.9 110 43.6
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 9.1e-07 58.5 93 39.8


User provided reference genes

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