Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.9e-48 195.7 109 100.0
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.0e-45 185.7 109 89.0
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.2e-44 182.2 109 93.6
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 5.3e-43 177.6 109 84.4
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.6e-34 149.4 109 68.8
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 3.5e-34 148.3 109 68.8
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 3.4e-29 131.7 109 62.4
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 7.5e-29 130.6 109 63.3
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.8e-28 128.6 109 61.5
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 8.3e-28 127.1 109 61.5
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.4e-27 125.6 107 60.7
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 4.5e-26 121.3 109 56.0
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.3e-25 119.8 109 57.8
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 2.3e-25 119.0 109 54.1
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.0e-25 117.9 109 54.1
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 5.0e-25 117.9 109 56.0
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.5e-24 116.3 109 54.1
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 1.5e-24 116.3 109 53.2
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.5e-24 116.3 112 56.2
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 7.2e-24 114.0 109 55.0
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 9.5e-24 113.6 109 52.3
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.2e-23 113.2 99 62.6
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.6e-23 112.8 109 54.1
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 2.8e-23 112.1 109 55.0
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.7e-23 111.3 109 52.3
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 6.1e-23 110.9 109 51.4
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 6.1e-23 110.9 109 51.4
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.0e-22 108.6 109 50.5
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 5.2e-22 107.8 109 49.5
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 8.9e-22 107.1 109 50.5
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 8.9e-22 107.1 109 49.5
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.2e-21 106.7 109 51.4
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 1.2e-21 106.7 109 50.5
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.0e-21 105.9 109 49.5
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 2.0e-21 105.9 131 48.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 4.4e-21 104.8 109 48.6
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.3e-20 103.2 109 49.5
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.3e-20 103.2 109 47.7
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.3e-20 103.2 109 47.7
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.3e-20 103.2 109 47.7
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.2e-20 102.4 109 48.6
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 2.8e-20 102.1 109 47.7
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.8e-20 102.1 109 46.8
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.8e-20 102.1 109 46.8
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 3.7e-20 101.7 109 45.9
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 3.7e-20 101.7 109 45.9
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 4.9e-20 101.3 109 45.9
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 4.9e-20 101.3 109 46.8
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 4.9e-20 101.3 109 47.7
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 8.3e-20 100.5 101 50.5
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 1.1e-19 100.1 109 45.9
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.4e-19 99.8 110 49.1
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.4e-19 99.8 118 50.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 2.4e-19 99.0 109 48.6
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.1e-19 98.6 109 46.8
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.1e-19 98.6 109 47.7
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.1e-19 98.2 89 57.3
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 4.1e-19 98.2 109 44.0
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 9.2e-19 97.1 109 48.6
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 9.2e-19 97.1 109 47.7
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 9.2e-19 97.1 109 47.7
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 9.2e-19 97.1 109 47.7
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.2e-18 96.7 109 45.0
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.0e-18 95.9 109 48.6
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 2.0e-18 95.9 109 44.0
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.7e-18 95.5 89 55.1
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.7e-18 95.5 89 55.1
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 2.7e-18 95.5 108 49.1
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 4.5e-18 94.7 109 47.7
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 4.5e-18 94.7 109 46.8
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 5.9e-18 94.4 109 45.0
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 7.8e-18 94.0 110 49.1
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 7.8e-18 94.0 89 52.8
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.8e-18 94.0 109 46.8
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.0e-17 93.6 108 49.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.0e-17 93.6 109 42.2
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.7e-17 92.8 110 46.4
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 2.3e-17 92.4 109 46.8
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 2.9e-17 92.0 93 53.8
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.8e-17 91.7 89 53.9
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 3.8e-17 91.7 109 45.9
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.0e-17 91.3 89 52.8
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.0e-17 91.3 109 46.8
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.0e-17 91.3 109 45.9
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 6.6e-17 90.9 109 47.7
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 6.6e-17 90.9 90 53.3
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 6.6e-17 90.9 104 47.1
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.6e-17 90.5 109 46.8
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.1e-16 90.1 113 47.8
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.5e-16 89.7 108 48.1
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.9e-16 89.4 125 42.4
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.9e-16 89.4 89 53.9
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.9e-16 89.4 110 44.5
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.5e-16 89.0 89 55.1
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 3.3e-16 88.6 109 42.2
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 4.3e-16 88.2 89 53.9
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 5.6e-16 87.8 110 43.6
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 5.6e-16 87.8 89 51.7
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 5.6e-16 87.8 109 45.0
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.6e-16 87.8 109 45.0
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.6e-16 87.8 109 45.0
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 5.6e-16 87.8 107 43.9
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 9.5e-16 87.0 107 47.7
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 9.5e-16 87.0 89 52.8
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 9.5e-16 87.0 89 51.7
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 9.5e-16 87.0 89 52.8
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.2e-15 86.7 109 45.9
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 1.6e-15 86.3 107 47.7
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.1e-15 85.9 89 53.9
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.1e-15 85.9 89 52.8
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.1e-15 85.9 89 52.8
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.8e-15 85.5 110 42.7
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 2.8e-15 85.5 108 44.4
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 3.6e-15 85.1 89 50.6
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 3.6e-15 85.1 110 41.8
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 3.6e-15 85.1 100 45.0
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 4.7e-15 84.7 110 43.6
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 4.7e-15 84.7 110 41.8
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 8.0e-15 84.0 89 49.4
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 1.0e-14 83.6 90 53.3
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 1.0e-14 83.6 90 53.3
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.0e-14 83.6 89 51.7
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.0e-14 83.6 108 47.2
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.4e-14 83.2 84 53.6
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.4e-14 83.2 111 44.1
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.3e-14 82.4 109 45.9
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 4.0e-14 81.6 90 52.2
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 4.0e-14 81.6 90 52.2
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 5.2e-14 81.3 109 48.6
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 5.2e-14 81.3 109 39.4
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 8.9e-14 80.5 105 45.7
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 8.9e-14 80.5 89 49.4
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 8.9e-14 80.5 89 49.4
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 8.9e-14 80.5 89 51.7
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 8.9e-14 80.5 110 40.9
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 1.2e-13 80.1 108 41.7
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-13 80.1 91 49.5
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.2e-13 80.1 109 42.2
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.5e-13 79.7 104 47.1
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.5e-13 79.7 83 48.2
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 2.0e-13 79.3 108 40.7
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.0e-13 79.3 83 48.2
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.0e-13 79.3 107 40.2
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 4.4e-13 78.2 106 44.3
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 4.4e-13 78.2 135 43.0
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 4.4e-13 78.2 107 43.9
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 5.8e-13 77.8 108 35.2
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 7.5e-13 77.4 86 47.7
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 7.5e-13 77.4 90 44.4
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 1.3e-12 76.6 108 41.7
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.3e-12 76.6 86 46.5
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-12 76.3 98 41.8
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 1.7e-12 76.3 91 47.3
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.7e-12 76.3 89 48.3
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.2e-12 75.9 75 52.0
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.9e-12 75.5 109 41.3
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.7e-12 75.1 109 39.4
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 1.1e-11 73.6 90 41.1
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.1e-11 73.6 86 47.7
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.2e-10 70.1 76 50.0
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.6e-10 69.7 110 42.7
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 2.0e-10 69.3 44 75.0
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 6.0e-10 67.8 100 38.0
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 6.0e-10 67.8 111 39.6
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 6.0e-10 67.8 111 39.6
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 6.0e-10 67.8 101 40.6
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 7.8e-10 67.4 91 41.8
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 7.8e-10 67.4 80 47.5
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.3e-09 66.6 80 43.8
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 2.3e-09 65.9 57 57.9
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 5.0e-09 64.7 107 34.6
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-08 61.6 70 48.6
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 4.3e-08 61.6 57 56.1
vmacro07457 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 7.3e-08 60.8 51 60.8
A10p30210 Brassica napus HOM05D008756 ORTHO05D003415 9.5e-08 60.5 108 34.3
FvH4_6g19790 Fragaria vesca HOM05D003660 ORTHO05D003415 9.5e-08 60.5 44 65.9
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 8.0e-07 57.4 141 33.3
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 1.1e-06 57.0 87 39.1
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 2.3e-06 55.8 42 64.3
BolC9t59806H Brassica oleracea HOM05D008756 ORTHO05D003415 8.9e-06 53.9 89 40.4
SMO240G0013 Selaginella moellendorffii HOM05D003660 ORTHO05D003415 8.9e-06 53.9 95 40.0
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 8.9e-06 53.9 111 32.4


User provided reference genes

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