Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 8.2e-85 317.0 158 100.0
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 4.6e-80 301.2 158 93.0
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.2e-75 286.6 158 88.6
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 5.5e-73 277.7 158 83.5
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.0e-71 273.5 158 82.9
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 2.4e-68 262.3 156 78.8
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 9.1e-68 260.4 156 78.2
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.5e-67 259.6 156 80.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 4.5e-67 258.1 156 76.9
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 7.7e-67 257.3 156 78.8
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 1.0e-66 256.9 156 78.8
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 1.1e-65 253.4 156 77.6
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 1.4e-65 253.1 156 78.2
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 2.5e-65 252.3 156 76.3
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 9.4e-65 250.4 156 76.3
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 9.4e-65 250.4 151 78.8
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.2e-64 250.0 156 75.0
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 2.1e-64 249.2 150 77.3
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 3.6e-64 248.4 156 75.6
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 4.7e-64 248.1 147 76.9
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 4.7e-64 248.1 152 76.3
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 6.1e-64 247.7 156 76.3
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 7.9e-64 247.3 152 79.6
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 7.9e-64 247.3 152 76.3
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 7.9e-64 247.3 156 76.9
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 7.9e-64 247.3 156 76.9
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.9e-64 247.3 150 77.3
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.4e-63 246.5 155 74.2
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 2.3e-63 245.7 150 78.0
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 2.3e-63 245.7 152 76.3
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 3.0e-63 245.4 156 74.4
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 3.9e-63 245.0 156 75.6
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 5.1e-63 244.6 155 78.7
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 6.7e-63 244.2 150 76.0
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 8.8e-63 243.8 152 72.4
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 8.8e-63 243.8 155 74.2
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 8.8e-63 243.8 156 76.3
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 8.8e-63 243.8 156 76.3
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 8.8e-63 243.8 148 79.1
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.1e-62 243.4 151 76.8
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 1.1e-62 243.4 147 77.6
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.5e-62 243.0 151 77.5
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.5e-62 243.0 150 74.7
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 2.0e-62 242.7 156 74.4
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 2.6e-62 242.3 150 76.0
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.6e-62 242.3 148 78.4
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 3.3e-62 241.9 156 73.7
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 3.3e-62 241.9 156 74.4
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.3e-62 241.9 156 74.4
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 9.7e-62 240.4 156 73.7
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 1.7e-61 239.6 156 72.4
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 2.8e-61 238.8 156 72.4
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.7e-61 238.4 150 75.3
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 3.7e-61 238.4 152 74.3
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 3.7e-61 238.4 146 78.1
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 3.7e-61 238.4 151 76.8
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 6.3e-61 237.7 151 74.8
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.1e-60 236.9 153 73.2
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.4e-60 236.5 156 71.2
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 1.4e-60 236.5 148 76.4
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.4e-60 236.5 156 73.1
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.8e-60 236.1 151 73.5
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 1.8e-60 236.1 150 73.3
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.8e-60 236.1 156 73.1
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.8e-60 236.1 156 72.4
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.8e-60 236.1 156 71.8
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 2.4e-60 235.7 151 73.5
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 4.1e-60 235.0 152 74.3
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 4.1e-60 235.0 156 74.4
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 5.3e-60 234.6 143 75.5
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 5.3e-60 234.6 156 71.8
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 9.1e-60 233.8 156 71.2
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.2e-59 233.4 151 72.8
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 2.0e-59 232.6 156 73.1
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 2.0e-59 232.6 147 73.5
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 2.0e-59 232.6 158 68.4
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 2.6e-59 232.3 156 73.7
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.5e-59 231.9 151 72.2
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 5.9e-59 231.1 147 75.5
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 7.7e-59 230.7 156 73.1
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 7.7e-59 230.7 150 71.3
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 2.5e-57 225.7 158 68.4
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 5.5e-57 224.6 136 75.0
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 2.1e-56 222.6 144 72.2
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.4e-55 219.9 157 68.2
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 6.7e-55 217.6 159 66.7
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 6.7e-55 217.6 158 67.1
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 8.8e-55 217.2 158 67.1
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 8.8e-55 217.2 150 68.0
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 8.8e-55 217.2 144 70.8
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 2.0e-54 216.1 156 66.0
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 2.6e-54 215.7 155 65.2
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 4.4e-54 214.9 145 69.7
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 5.7e-54 214.5 154 66.2
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 1.3e-53 213.4 143 69.9
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.7e-53 213.0 154 65.6
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 2.2e-53 212.6 145 68.3
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 4.8e-53 211.5 154 64.3
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 6.3e-53 211.1 154 64.9
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 6.3e-53 211.1 154 63.6
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 6.3e-53 211.1 154 64.3
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 7.0e-52 207.6 154 62.3
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 1.2e-51 206.8 154 63.6
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 1.2e-51 206.8 154 63.6
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 2.7e-51 205.7 127 79.5
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 7.7e-51 204.1 154 62.3
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.0e-50 203.8 143 65.0
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.8e-50 201.8 158 62.7
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 5.0e-50 201.4 142 65.5
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 1.9e-49 199.5 145 64.1
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 2.5e-49 199.1 153 59.5
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.6e-48 196.4 141 62.4
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 8.8e-47 190.7 154 61.0
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.3e-45 186.8 123 76.4
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.1e-44 183.7 122 72.1
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.2e-40 170.2 142 57.7
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 4.0e-39 165.2 131 59.5
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 4.4e-38 161.8 116 71.6
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 7.5e-38 161.0 142 51.4
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 2.2e-37 159.5 146 52.7
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 8.3e-37 157.5 97 74.2
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 4.1e-36 155.2 146 50.7
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 5.4e-36 154.8 142 54.2
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 2.9e-34 149.1 135 59.3
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 2.5e-33 146.0 100 69.0
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 1.4e-31 140.2 142 50.0
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.7e-29 132.1 102 59.8
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 6.4e-29 131.3 141 51.1
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 3.2e-28 129.0 151 48.3
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 5.0e-26 121.7 144 45.8
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 1.6e-24 116.7 150 45.3
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.2e-22 110.5 75 70.7
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.3e-21 107.1 84 57.1
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 4.9e-21 105.1 83 59.0


User provided reference genes

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