Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 5.0e-90 334.7 210 100.0
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 2.6e-86 322.4 210 95.7
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 5.4e-76 288.1 210 89.0
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.4e-68 263.5 208 81.2
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.5e-57 226.9 202 77.2
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 4.4e-54 215.3 202 70.8
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.2e-52 209.1 203 70.4
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.2e-51 207.2 203 74.4
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 3.9e-50 202.2 205 71.7
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.9e-50 202.2 202 72.3
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.1e-49 200.7 202 73.3
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 2.8e-48 196.1 211 69.7
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 4.8e-48 195.3 210 70.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.8e-47 193.4 202 70.8
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.1e-47 192.6 202 70.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.1e-47 192.6 210 69.5
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 5.3e-47 191.8 212 69.8
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 5.3e-47 191.8 228 61.8
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 5.3e-47 191.8 210 69.0
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 9.0e-47 191.0 210 68.6
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.2e-46 190.7 210 67.6
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.2e-46 190.7 202 70.8
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.0e-46 189.9 212 67.9
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 2.0e-46 189.9 210 69.0
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.0e-46 189.9 202 68.8
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 2.6e-46 189.5 203 69.5
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 3.4e-46 189.1 196 71.4
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.4e-46 189.1 210 65.7
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.4e-46 189.1 210 65.7
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 4.5e-46 188.7 203 69.0
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 5.8e-46 188.3 202 67.3
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.6e-46 188.0 202 69.8
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 7.6e-46 188.0 204 68.6
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.3e-45 187.2 203 66.0
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 2.2e-45 186.4 203 67.0
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 3.8e-45 185.7 208 65.9
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 4.9e-45 185.3 198 69.7
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 4.9e-45 185.3 198 69.7
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.4e-44 183.7 204 67.2
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 2.4e-44 183.0 203 69.0
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 3.2e-44 182.6 202 66.8
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-43 180.3 203 66.5
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.1e-43 179.9 202 66.8
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 6.0e-43 178.3 204 65.7
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 7.9e-43 177.9 210 64.8
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.0e-42 177.6 204 67.2
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.3e-42 177.2 205 66.8
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.1e-42 175.3 204 64.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.5e-41 173.7 204 66.7
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 4.3e-41 172.2 203 53.2
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 4.3e-41 172.2 203 67.0
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 7.4e-41 171.4 193 67.4
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.6e-40 170.2 211 67.3
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.6e-40 170.2 211 67.3
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 8.1e-40 167.9 207 64.7
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 8.1e-40 167.9 202 63.9
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 8.1e-40 167.9 217 62.2
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.4e-39 167.2 202 65.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.4e-39 166.4 202 63.4
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 4.0e-39 165.6 202 49.0
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 4.0e-39 165.6 202 65.8
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 5.3e-39 165.2 195 66.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 6.9e-39 164.9 205 66.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 9.0e-39 164.5 206 65.0
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 9.0e-39 164.5 257 46.3
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.2e-38 164.1 202 60.9
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.5e-38 163.7 222 60.4
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 2.0e-38 163.3 200 64.5
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.6e-38 162.9 202 48.0
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.6e-38 162.9 195 65.1
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 3.4e-38 162.5 181 68.5
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 7.6e-38 161.4 202 47.5
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 7.6e-38 161.4 202 47.5
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 7.6e-38 161.4 199 55.8
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 7.6e-38 161.4 206 64.6
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.0e-37 161.0 197 67.0
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.3e-37 160.6 202 58.9
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.9e-37 159.5 202 60.9
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.9e-37 159.5 200 64.0
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.9e-37 159.5 208 55.8
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 3.8e-37 159.1 200 66.5
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 8.4e-37 157.9 190 65.3
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 2.5e-36 156.4 188 54.3
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 3.2e-36 156.0 144 67.4
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 4.2e-36 155.6 202 63.4
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 7.1e-36 154.8 205 56.6
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 9.3e-36 154.5 201 59.7
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.1e-35 153.3 203 63.1
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 2.7e-35 152.9 202 63.9
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 2.7e-35 152.9 210 62.9
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-35 151.8 186 47.3
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.0e-34 151.0 209 56.9
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.8e-34 150.2 203 63.1
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.8e-34 150.2 208 60.1
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 3.0e-34 149.4 200 49.0
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.0e-34 149.4 202 61.9
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 3.9e-34 149.1 206 60.7
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 8.7e-34 147.9 201 59.2
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 202 59.9
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 201 61.2
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 2.5e-33 146.4 208 59.6
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 9.6e-33 144.4 205 59.5
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.3e-32 144.1 199 56.8
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.3e-32 144.1 209 61.2
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.2e-32 141.7 208 58.7
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 8.2e-32 141.4 201 56.7
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.1e-31 141.0 208 58.7
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.4e-31 139.8 208 58.2
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.6e-30 136.3 210 59.0
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.5e-29 131.7 208 46.2
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.9e-28 130.2 231 47.2
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 7.1e-28 128.3 202 58.4
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 3.5e-27 125.9 181 61.9
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-26 124.4 203 39.4
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 1.5e-25 120.6 215 47.9
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 7.4e-25 118.2 150 70.0
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.2e-24 116.7 147 68.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 8.2e-24 114.8 203 55.7
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 8.2e-24 114.8 208 43.3
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.1e-23 112.8 146 52.7
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 5.3e-23 112.1 144 56.2
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 2.0e-22 110.2 203 39.4
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 2.0e-22 110.2 203 39.4
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.0e-22 110.2 209 53.6
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.4e-22 109.4 155 63.9
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 2.9e-21 106.3 203 38.4
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-20 103.6 205 38.5
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-18 97.8 199 51.8
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.0e-18 97.8 199 51.8
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-18 97.1 199 48.2
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-18 97.1 199 48.2
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.8e-18 97.1 199 48.2
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.8e-18 97.1 199 48.2
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 6.7e-18 95.1 174 39.7
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.5e-17 94.0 147 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 7.4e-17 91.7 204 44.1
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 1.7e-16 90.5 120 65.0
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.8e-16 89.0 85 57.6
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.1e-15 87.8 136 62.5
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.1e-15 87.8 117 65.0
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.8e-15 87.0 147 38.8
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.0e-13 81.3 182 47.8
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 6.5e-13 78.6 59 69.5
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 5.5e-12 75.5 186 47.8
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 9.4e-12 74.7 79 63.3
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 1.3e-08 64.3 150 36.0
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 6.3e-08 62.0 165 41.8
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 5.3e-07 58.9 62 48.4


User provided reference genes

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