Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 5.2e-287 990.3 493 100.0
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.0e-278 961.8 513 94.0
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 3.6e-272 941.0 513 91.8
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.8e-263 912.1 513 88.5
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.4e-214 748.4 508 72.6
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 4.2e-212 741.5 509 71.7
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.7e-211 738.8 506 72.7
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.5e-211 738.4 513 72.3
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.3e-210 736.5 509 72.1
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.1e-210 734.6 506 72.5
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 6.7e-210 734.2 507 72.4
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 5.7e-209 731.1 514 71.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.7e-208 728.4 491 72.1
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-207 726.9 491 71.9
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 4.1e-207 724.9 509 70.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.9e-205 718.8 513 70.2
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 5.0e-205 718.0 506 70.2
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 5.0e-205 718.0 511 69.3
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.9e-204 716.1 511 69.3
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 2.5e-204 715.7 509 70.3
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 6.1e-203 711.1 506 69.8
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.8e-202 709.5 508 69.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.8e-202 709.5 507 70.0
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.9e-202 708.4 509 69.7
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 8.8e-202 707.2 511 69.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.1e-201 706.8 509 70.1
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.5e-201 706.4 504 70.0
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 5.7e-201 704.5 505 70.5
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.4e-201 704.1 509 69.5
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.3e-200 703.4 509 69.5
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.7e-200 703.0 505 69.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.2e-200 702.6 509 68.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.8e-200 701.4 499 69.9
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.2e-200 700.7 512 68.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.4e-199 699.9 512 68.2
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.9e-199 697.6 491 70.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.9e-199 697.6 491 70.5
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-198 696.4 512 67.4
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.6e-198 695.7 512 67.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.9e-198 694.5 513 67.8
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 7.7e-198 694.1 547 64.7
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.0e-197 693.7 512 66.4
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.2e-197 692.6 547 65.3
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.2e-197 692.6 505 69.1
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.2e-197 692.6 513 67.3
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 3.8e-197 691.8 502 68.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 5.0e-197 691.4 509 68.0
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 6.5e-197 691.0 505 68.9
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 6.5e-197 691.0 509 67.6
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.9e-196 689.5 505 68.5
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 3.2e-196 688.7 508 67.7
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 4.2e-196 688.3 522 67.0
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 7.2e-196 687.6 547 64.9
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-195 686.8 506 68.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.2e-195 686.8 516 66.7
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.6e-195 686.4 506 68.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.7e-195 685.6 513 68.0
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 3.6e-195 685.3 505 68.1
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 3.6e-195 685.3 505 68.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.7e-195 684.9 506 68.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.7e-195 684.9 506 68.6
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.4e-194 683.3 510 68.4
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.8e-194 682.9 506 67.2
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.3e-194 682.6 502 68.1
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.3e-194 682.6 505 68.3
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 2.3e-194 682.6 506 68.6
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 8.8e-194 680.6 509 67.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.0e-193 679.5 505 68.3
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 7.4e-193 677.6 510 66.5
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.4e-193 677.6 503 67.8
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 9.7e-193 677.2 505 67.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.7e-192 676.4 505 67.9
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.7e-192 676.4 505 68.1
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-192 676.4 495 68.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.2e-192 676.0 505 67.9
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 6.3e-192 674.5 525 63.8
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 6.3e-192 674.5 504 68.5
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 8.2e-192 674.1 505 67.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 8.2e-192 674.1 505 68.1
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 8.2e-192 674.1 505 68.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.4e-191 673.3 489 66.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 6.9e-191 671.0 513 64.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.2e-190 670.2 509 66.0
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 2.6e-190 669.1 508 67.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.2e-189 666.0 506 66.6
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.9e-189 665.6 479 71.0
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 5.0e-189 664.8 509 65.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 8.5e-189 664.1 514 64.6
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 8.5e-189 664.1 492 67.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-188 663.3 483 69.8
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-188 662.9 498 67.1
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.5e-188 662.5 498 67.3
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.2e-188 662.1 474 70.0
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 4.7e-187 658.3 470 69.8
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.0e-187 657.5 476 68.5
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.0e-186 655.6 600 58.3
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.9e-186 655.2 504 65.5
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.1e-185 653.7 510 64.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.0e-185 652.9 509 65.6
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.6e-185 652.5 511 63.4
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.6e-185 652.5 508 65.4
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.4e-183 646.7 452 72.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.6e-179 633.3 501 63.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.0e-178 630.6 587 57.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 5.2e-178 628.2 507 61.9
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.0e-177 626.3 470 66.8
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.7e-177 624.0 507 64.1
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.3e-176 623.6 510 60.4
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.7e-176 623.2 461 68.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 4.1e-175 618.6 498 64.1
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.1e-175 617.5 508 63.4
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.2e-174 617.1 511 61.6
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.7e-173 613.2 565 58.2
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.5e-172 609.4 500 61.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 3.6e-171 605.5 510 62.4
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 4.7e-171 605.1 447 68.2
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 6.1e-171 604.7 527 60.0
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 8.0e-171 604.4 513 59.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.8e-168 595.9 500 60.0
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 4.8e-168 595.1 450 67.3
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.1e-167 592.0 526 59.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 6.6e-157 558.1 506 57.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.4e-154 550.4 642 48.8
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.4e-152 541.6 400 67.2
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 3.9e-149 532.3 402 65.7
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.1e-140 504.2 529 52.6
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 9.5e-140 501.1 542 49.6
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.8e-139 499.6 501 55.7
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 6.2e-131 471.9 488 52.0
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.5e-129 467.2 453 55.6
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 5.1e-125 452.2 416 55.3
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.8e-115 419.9 325 65.2
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.3e-101 373.6 273 68.5
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.8e-99 365.9 271 70.1
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.3e-92 343.2 283 63.3
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.7e-81 305.4 211 68.7
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.8e-75 287.0 243 62.6
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.4e-74 283.9 242 60.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.5e-73 280.0 481 39.1
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 4.7e-70 269.6 258 53.9
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.3e-68 263.5 252 54.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 5.0e-48 196.4 576 28.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.6e-44 184.1 135 65.2
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 7.5e-44 182.6 388 32.7
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 4.7e-38 163.3 106 74.5
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-34 152.1 227 41.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.2e-34 150.6 227 40.5
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.6e-33 146.7 166 52.4
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.8e-30 137.5 112 55.4
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 4.0e-29 133.7 71 84.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.7e-25 120.9 150 41.3
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-24 118.2 106 61.3
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.7e-22 110.2 63 82.5
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 9.9e-20 102.4 82 68.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 8.6e-16 89.4 156 29.5
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 5.6e-15 86.7 113 46.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.0e-12 78.2 76 55.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.7e-08 65.1 113 33.6
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.9e-08 63.9 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 1.9e-07 61.6 40 67.5
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.9e-07 61.6 211 27.5
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.3e-06 58.9 177 27.1
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-06 58.2 105 39.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 6.2e-06 56.6 113 33.6


User provided reference genes

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