Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 5.7e-164 580.9 295 100.0
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 7.9e-150 533.9 299 91.6
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 7.0e-146 520.8 299 90.6
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 2.9e-128 462.2 299 82.3
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 8.9e-109 397.5 299 69.6
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 4.4e-108 395.2 298 70.1
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 4.1e-106 388.7 297 68.0
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.6e-105 386.7 300 68.0
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 2.0e-105 386.3 293 70.0
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 4.6e-105 385.2 301 66.4
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.0e-105 384.8 297 67.3
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 1.3e-104 383.6 293 68.6
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.9e-104 382.1 297 67.7
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 5.0e-104 381.7 297 68.0
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 2.5e-103 379.4 298 68.1
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 5.6e-103 378.3 294 66.0
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 9.5e-103 377.5 322 64.3
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.1e-102 376.3 295 67.5
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 3.6e-102 375.6 295 67.5
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.7e-102 375.2 296 67.9
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.7e-102 375.2 296 67.9
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 6.2e-102 374.8 294 68.0
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.1e-101 374.0 296 67.2
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 1.8e-101 373.2 248 75.0
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.8e-101 373.2 293 66.9
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 4.0e-101 372.1 294 64.6
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.2e-101 371.7 296 67.2
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 5.8e-100 368.2 303 64.7
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.7e-99 366.7 295 63.4
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.7e-97 359.4 216 79.2
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.5e-97 359.0 302 63.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 4.6e-97 358.6 312 62.5
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 4.6e-97 358.6 294 65.6
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 6.0e-97 358.2 298 64.4
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 2.3e-96 356.3 303 63.4
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 3.0e-96 355.9 300 63.7
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 5.1e-96 355.1 283 65.4
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 6.6e-96 354.8 297 65.0
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.9e-95 353.2 307 62.2
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.9e-95 353.2 302 64.9
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 2.5e-95 352.8 302 62.9
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.5e-95 352.8 299 64.9
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 4.3e-95 352.1 296 63.2
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 5.6e-95 351.7 293 62.8
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 7.3e-95 351.3 296 64.5
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 7.3e-95 351.3 300 62.7
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.2e-94 350.5 292 64.7
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.2e-94 350.5 216 78.7
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 4.7e-94 348.6 298 63.4
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 6.2e-94 348.2 296 64.9
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.1e-93 347.4 297 64.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 1.1e-93 347.4 293 65.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 4.0e-93 345.5 236 72.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 1.2e-92 344.0 295 63.1
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 1.5e-92 343.6 298 61.4
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 3.4e-92 342.4 296 63.2
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 4.4e-92 342.0 294 61.9
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 5.8e-92 341.7 296 62.8
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 5.8e-92 341.7 236 72.0
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 1.7e-91 340.1 287 61.7
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.7e-91 340.1 264 65.5
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.7e-91 340.1 297 62.3
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.2e-91 339.7 245 69.4
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 2.9e-91 339.3 297 64.0
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 3.7e-91 339.0 296 62.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 4.9e-91 338.6 305 60.3
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 8.3e-91 337.8 287 62.7
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 8.3e-91 337.8 219 74.9
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.4e-90 336.3 251 67.7
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.4e-90 336.3 251 67.7
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 5.4e-90 335.1 297 61.6
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 5.4e-90 335.1 297 61.6
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 5.4e-90 335.1 235 71.1
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.7e-89 332.8 213 74.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.3e-88 330.5 217 73.7
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.7e-88 330.1 216 72.2
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 1.7e-88 330.1 290 62.8
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 5.1e-88 328.6 225 70.2
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.5e-87 327.0 190 81.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.5e-87 327.0 274 62.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 2.5e-87 326.2 232 72.8
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 3.3e-87 325.9 294 61.2
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.3e-87 325.9 319 58.3
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.6e-86 323.6 213 73.7
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.6e-86 323.6 320 56.9
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 3.1e-85 319.3 233 68.7
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 4.4e-84 315.5 211 69.2
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 9.9e-84 314.3 293 58.7
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 2.2e-83 313.2 231 67.1
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 5.1e-80 302.0 221 69.2
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 6.0e-73 278.5 220 59.5
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 3.6e-70 269.2 222 57.7
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 4.8e-70 268.9 242 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.2e-66 256.1 215 56.3
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.8e-62 242.3 217 56.7
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 5.3e-61 238.8 219 60.7
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 7.1e-58 228.4 225 56.4
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.0e-56 224.6 189 63.0
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 3.0e-56 223.0 224 59.4
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 3.9e-56 222.6 243 48.6
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 5.6e-55 218.8 176 64.2
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 6.2e-54 215.3 245 46.5
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 4.5e-52 209.1 191 51.3
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 1.2e-49 201.1 155 65.2
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.9e-49 198.4 151 68.2
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 7.9e-41 171.8 134 67.9
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.4e-40 171.0 164 58.5
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.5e-39 166.8 117 68.4
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 3.3e-39 166.4 105 73.3
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 8.8e-32 141.7 79 79.7
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 5.7e-31 139.0 71 90.1
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 5.7e-31 139.0 71 90.1
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 5.3e-21 105.9 166 47.6
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 1.0e-19 101.7 224 29.5
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 3.6e-17 93.2 69 79.7
CsaV3_7G026110 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.5e-15 87.8 96 60.4
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 6.3e-14 82.4 108 46.3
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 3.2e-10 70.1 55 70.9
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 4.7e-09 66.2 49 69.4
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 6.1e-09 65.9 46 65.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.3e-08 63.9 124 27.4
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 4.0e-08 63.2 265 24.2
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.5e-07 61.2 43 58.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.3e-06 58.2 276 22.5


User provided reference genes

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