Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 5.0e-64 247.7 129 100.0
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 6.7e-61 237.3 129 95.3
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 1.8e-53 212.6 129 84.5
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 1.7e-48 196.1 129 78.3
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 9.8e-36 153.7 129 59.7
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 2.8e-35 152.1 129 60.5
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 5.4e-34 147.9 128 57.0
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 7.0e-34 147.5 125 59.2
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 1.2e-33 146.7 129 57.4
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.6e-33 146.4 128 57.0
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 1.6e-33 146.4 131 57.3
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 2.0e-33 146.0 133 57.1
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 2.0e-33 146.0 127 59.1
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 2.7e-33 145.6 128 55.5
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 4.5e-33 144.8 128 55.5
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 4.5e-33 144.8 128 56.2
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 1.3e-32 143.3 128 56.2
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 1.7e-32 142.9 126 57.1
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 5.0e-32 141.4 128 53.9
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.1e-31 140.2 121 57.9
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 1.9e-31 139.4 124 54.8
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 2.5e-31 139.0 125 58.4
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 5.5e-31 137.9 125 56.0
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 5.5e-31 137.9 135 52.6
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 1.6e-30 136.3 128 53.9
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.1e-30 136.0 125 54.4
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 2.8e-30 135.6 128 53.1
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.8e-30 135.6 133 54.1
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 3.6e-30 135.2 128 54.7
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 3.6e-30 135.2 145 49.7
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 4.7e-30 134.8 127 52.0
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 8.0e-30 134.0 128 51.6
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 8.0e-30 134.0 128 52.3
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 1.0e-29 133.7 127 51.2
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 1.0e-29 133.7 127 51.2
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 1.0e-29 133.7 127 51.2
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 1.0e-29 133.7 129 51.9
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 1.0e-29 133.7 127 52.0
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 2.3e-29 132.5 127 53.5
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 3.0e-29 132.1 127 50.4
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 3.0e-29 132.1 127 50.4
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 4.0e-29 131.7 129 52.7
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 5.2e-29 131.3 127 50.4
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 5.2e-29 131.3 126 51.6
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 6.8e-29 131.0 125 54.4
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 8.8e-29 130.6 130 52.3
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 1.2e-28 130.2 127 52.0
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 2.0e-28 129.4 146 48.6
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.6e-28 129.0 124 53.2
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 2.6e-28 129.0 115 58.3
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 7.5e-28 127.5 128 50.0
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 7.5e-28 127.5 99 62.6
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 9.8e-28 127.1 130 50.8
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 1.7e-27 126.3 127 52.0
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.2e-27 125.9 140 48.6
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 2.2e-27 125.9 122 52.5
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 6.3e-27 124.4 126 53.2
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 6.3e-27 124.4 124 49.2
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 8.3e-27 124.0 124 48.4
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 1.4e-26 123.2 126 52.4
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.4e-26 123.2 125 51.2
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 2.4e-26 122.5 127 48.8
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 2.4e-26 122.5 124 49.2
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 2.4e-26 122.5 125 51.2
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 3.1e-26 122.1 124 49.2
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 3.1e-26 122.1 124 49.2
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 3.1e-26 122.1 125 50.4
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 3.1e-26 122.1 135 47.4
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 4.1e-26 121.7 126 53.2
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 5.4e-26 121.3 121 52.1
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 7.0e-26 120.9 130 47.7
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 7.0e-26 120.9 129 48.1
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 7.0e-26 120.9 128 47.7
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 1.2e-25 120.2 122 47.5
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.2e-25 120.2 98 59.2
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 1.6e-25 119.8 122 52.5
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 1.6e-25 119.8 126 46.0
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 2.0e-25 119.4 128 47.7
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 2.7e-25 119.0 127 47.2
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 4.5e-25 118.2 124 50.0
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 4.5e-25 118.2 124 50.0
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 5.9e-25 117.9 130 46.2
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 5.9e-25 117.9 129 48.1
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 7.8e-25 117.5 121 49.6
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 7.8e-25 117.5 124 49.2
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 7.8e-25 117.5 128 44.5
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 2.3e-24 115.9 128 46.9
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 2.9e-24 115.5 167 40.7
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 6.6e-24 114.4 126 46.0
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 7.3e-23 110.9 135 45.9
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 1.6e-22 109.8 124 45.2
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 2.1e-22 109.4 122 45.9
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 2.8e-22 109.0 160 40.0
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 1.0e-21 107.1 124 45.2
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 1.0e-21 107.1 124 45.2
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 1.0e-21 107.1 124 45.2
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 1.8e-21 106.3 110 49.1
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 2.3e-21 105.9 122 45.9
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 5.2e-21 104.8 79 60.8
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 1.2e-20 103.6 78 59.0
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 1.4e-18 96.7 73 60.3
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 1.8e-18 96.3 80 55.0
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.6e-17 93.2 119 43.7
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 2.0e-17 92.8 119 42.9
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 3.5e-17 92.0 80 53.8
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 1.2e-14 83.6 79 49.4
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 3.6e-14 82.0 102 46.1
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 2.6e-12 75.9 79 50.6
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 7.5e-12 74.3 117 36.8
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 4.9e-11 71.6 117 33.3
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 8.3e-11 70.9 109 34.9
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 1.4e-10 70.1 116 36.2
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 2.4e-10 69.3 98 40.8
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 2.4e-10 69.3 98 40.8
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 6.0e-09 64.7 87 43.7
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 1.0e-08 63.9 47 66.0
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 1.7e-08 63.2 87 43.7
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 2.3e-08 62.8 87 42.5
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 6.6e-08 61.2 89 41.6


User provided reference genes

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