Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 7.0e-174 614.0 343 100.0
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.4e-158 562.4 344 87.2
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 8.6e-156 553.9 351 92.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 3.8e-127 458.8 341 76.0
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.0e-120 436.4 343 72.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 5.9e-80 302.0 347 56.2
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.6e-69 266.2 350 47.7
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.8e-68 263.8 347 49.0
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 5.2e-68 262.3 343 51.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.5e-64 249.6 340 54.7
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 7.7e-64 248.4 336 48.5
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 2.5e-62 243.4 347 47.0
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 7.2e-62 241.9 358 50.3
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 8.0e-61 238.4 322 53.7
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 8.0e-61 238.4 337 49.9
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 8.0e-61 238.4 346 46.5
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.0e-60 236.1 341 53.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.0e-60 236.1 337 49.9
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 8.9e-60 235.0 341 53.4
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-59 234.6 339 54.9
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-59 234.6 341 53.1
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.2e-58 230.3 337 46.6
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 8.3e-58 228.4 344 45.3
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-56 224.6 341 47.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.0e-56 223.8 348 43.7
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 3.5e-56 223.0 340 45.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 4.5e-56 222.6 350 46.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 7.8e-56 221.9 336 44.6
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.9e-55 219.9 353 46.2
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.9e-54 217.2 338 45.9
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.1e-53 213.8 350 44.3
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 3.6e-53 213.0 333 43.2
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.4e-52 211.1 335 44.5
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.2e-51 208.0 335 43.9
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.5e-51 207.6 341 45.5
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.8e-51 204.9 335 43.6
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.3e-50 204.5 354 42.7
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.7e-50 204.1 351 42.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.4e-50 202.2 339 46.6
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.9e-49 200.7 343 43.7
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.4e-49 200.3 339 42.2
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.8e-48 195.3 338 43.8
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.9e-47 193.0 329 42.2
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.3e-46 189.9 322 42.5
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 5.6e-46 189.1 350 42.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.1e-45 187.2 344 41.9
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.1e-44 184.9 355 42.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.8e-44 184.1 360 37.5
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.3e-44 183.7 349 40.7
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.5e-43 181.0 333 40.8
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.6e-43 180.3 349 39.3
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.4e-43 179.5 347 39.2
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 9.8e-43 178.3 357 39.5
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 8.3e-42 175.3 337 38.6
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 4.1e-41 172.9 332 39.8
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 7.1e-41 172.2 348 40.8
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 2.1e-40 170.6 340 39.4
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 6.0e-40 169.1 323 38.7
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.0e-39 168.3 337 40.7
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.3e-39 167.9 328 43.9
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 5.1e-39 166.0 330 40.9
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 6.6e-39 165.6 339 38.1
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 6.6e-39 165.6 346 38.4
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 2.5e-38 163.7 339 40.7
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.3e-38 163.3 344 39.8
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 7.3e-38 162.2 218 48.2
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 7.3e-38 162.2 218 48.2
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 7.3e-38 162.2 346 39.6
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.2e-37 161.4 325 40.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.6e-37 161.0 360 37.8
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 8.1e-37 158.7 363 39.1
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 8.1e-37 158.7 346 36.4
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-36 158.3 218 47.2
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-36 158.3 218 47.2
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-36 158.3 218 47.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 3.1e-36 156.8 337 36.5
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-36 156.4 218 47.2
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-36 156.4 218 47.2
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 6.8e-36 155.6 354 38.7
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 6.8e-36 155.6 323 37.8
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.6e-35 153.7 321 38.3
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 2.2e-34 150.6 355 38.3
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.9e-34 150.2 381 35.2
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.7e-34 149.8 349 38.4
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 6.4e-34 149.1 399 38.1
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.4e-33 147.9 346 38.2
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 4.1e-33 146.4 321 36.4
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.2e-33 145.2 137 62.8
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.6e-32 144.4 350 34.9
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 3.5e-32 143.3 321 38.3
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 6.0e-32 142.5 334 37.4
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 5.1e-31 139.4 152 55.3
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.1e-30 138.3 345 36.2
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.4e-28 131.3 343 35.6
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.4e-28 131.3 343 33.2
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.4e-28 131.3 343 33.2
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.4e-28 131.3 335 37.3
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.8e-28 131.0 343 33.2
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.1e-28 130.2 323 36.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.1e-28 130.2 196 46.4
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-28 129.8 196 46.4
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.2e-28 129.4 326 38.0
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 6.8e-28 129.0 322 33.2
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 8.9e-28 128.6 332 38.0
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.2e-27 128.3 339 35.1
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-27 127.5 198 46.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.4e-27 126.3 331 35.6
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 9.9e-27 125.2 346 36.4
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.3e-26 124.8 332 36.7
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.7e-26 124.4 346 36.4
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 2.2e-26 124.0 352 36.4
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.9e-26 123.6 335 34.3
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.8e-26 123.2 340 35.0
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 8.4e-26 122.1 322 34.8
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 8.4e-26 122.1 337 32.0
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-25 121.7 196 44.9
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.4e-25 121.3 345 35.1
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-25 120.9 358 36.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.2e-25 119.8 327 36.1
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.2e-25 119.8 331 32.9
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 5.4e-25 119.4 346 36.4
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.6e-24 117.9 318 35.2
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 2.7e-24 117.1 340 30.9
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.6e-24 116.3 328 34.5
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.0e-23 115.2 353 35.7
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.0e-23 115.2 92 71.7
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.3e-23 114.8 433 33.5
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 5.1e-23 112.8 215 42.8
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 6.6e-23 112.5 353 36.0
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 8.7e-23 112.1 321 34.6
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.5e-22 111.3 337 30.6
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 1.5e-22 111.3 336 34.5
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 2.5e-22 110.5 279 36.9
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 8.1e-21 105.5 346 30.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 5.3e-20 102.8 219 36.5
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 6.9e-20 102.4 324 32.1
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.5e-19 101.3 137 46.0
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.4e-19 100.1 222 34.7
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 4.4e-19 99.8 326 35.6
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 4.4e-19 99.8 71 74.6
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 9.9e-19 98.6 314 29.9
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 2.2e-18 97.4 130 49.2
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.2e-16 91.7 287 33.4
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 4.6e-16 89.7 334 29.9
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 4.6e-16 89.7 224 36.2
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.5e-14 84.0 125 43.2
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 5.6e-14 82.8 188 33.5
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 9.6e-14 82.0 346 29.8
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.6e-13 81.3 343 30.3
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 3.6e-13 80.1 247 32.8
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 4.0e-12 76.6 291 34.7
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.3e-12 76.3 302 30.5
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.8e-10 70.1 283 32.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 4.2e-09 66.6 229 31.9
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 7.1e-09 65.9 227 30.8
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 7.9e-08 62.4 151 33.8
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.8e-07 61.2 294 29.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.9e-07 60.1 283 32.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.7e-07 59.3 99 47.5
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.1e-06 58.5 272 30.1
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 4.3e-06 56.6 32 78.1


User provided reference genes

Program Settings