Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 1.8e-127 459.5 273 100.0
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 1.7e-117 426.4 273 94.5
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 7.2e-113 411.0 274 87.6
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 9.5e-65 251.1 276 67.0
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 8.4e-29 131.7 256 43.8
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 2.4e-28 130.2 259 40.2
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.6e-27 127.5 248 41.1
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 7.9e-27 125.2 247 42.5
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 6.7e-26 122.1 216 38.4
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 8.7e-26 121.7 192 40.1
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.1e-25 121.3 252 40.9
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 7.4e-25 118.6 233 42.5
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 7.4e-25 118.6 244 45.1
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.6e-24 117.5 192 39.1
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.1e-24 117.1 192 38.5
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 2.1e-24 117.1 259 38.6
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 3.7e-24 116.3 215 45.1
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 8.1e-24 115.2 192 38.5
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.4e-23 114.4 211 38.4
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 5.3e-23 112.5 238 40.8
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.5e-22 110.9 228 35.1
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 2.0e-22 110.5 245 39.2
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 2.0e-22 110.5 243 42.4
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.6e-22 110.2 226 46.0
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 5.8e-22 109.0 268 33.2
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 1.0e-21 108.2 255 38.4
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 1.3e-21 107.8 261 34.1
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 2.9e-21 106.7 248 39.9
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 3.8e-21 106.3 243 42.0
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.9e-21 105.9 239 36.8
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 1.4e-20 104.4 257 41.2
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.4e-20 104.4 241 45.6
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.4e-20 104.4 241 46.9
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.9e-20 104.0 277 41.5
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 2.5e-20 103.6 162 48.1
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 4.2e-20 102.8 272 36.0
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 7.1e-20 102.1 248 38.3
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.6e-19 100.9 211 42.7
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 2.7e-19 100.1 160 40.0
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 1.3e-18 97.8 254 31.9
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 8.7e-18 95.1 256 38.3
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 1.1e-17 94.7 228 42.1
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 1.1e-17 94.7 257 33.1
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.5e-17 94.4 251 29.5
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.9e-17 94.0 310 36.1
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 5.7e-17 92.4 255 28.6
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.4e-17 92.0 310 35.8
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 7.4e-17 92.0 259 31.7
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 9.6e-17 91.7 257 36.2
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.6e-16 90.9 197 36.5
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.8e-16 90.1 238 37.8
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.8e-16 90.1 201 33.3
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 6.2e-16 89.0 210 43.3
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 6.2e-16 89.0 266 32.3
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 8.2e-16 88.6 288 30.2
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 8.2e-16 88.6 251 38.6
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.1e-15 88.2 262 30.5
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.8e-15 87.4 148 46.6
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 2.4e-15 87.0 259 29.7
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 3.1e-15 86.7 201 37.3
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 3.1e-15 86.7 257 29.2
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 4.1e-15 86.3 258 32.2
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.3e-15 85.9 201 37.3
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 6.9e-15 85.5 257 38.1
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 1.5e-14 84.3 265 29.4
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 1.5e-14 84.3 257 32.3
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.0e-14 84.0 292 34.2
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 4.5e-14 82.8 258 32.2
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 5.8e-14 82.4 206 35.4
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.8e-14 82.4 296 34.8
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 5.8e-14 82.4 263 30.8
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 5.8e-14 82.4 254 29.9
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.0e-13 81.6 253 30.4
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.7e-13 80.9 145 49.0
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.7e-13 80.9 261 33.7
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 1.7e-13 80.9 257 33.1
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 2.2e-13 80.5 255 34.9
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.2e-13 80.5 145 46.9
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.2e-13 80.5 261 31.8
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.8e-13 79.7 248 38.3
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.0e-13 79.3 288 31.6
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 8.4e-13 78.6 165 34.5
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 1.1e-12 78.2 260 30.4
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.1e-12 78.2 244 35.7
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 1.4e-12 77.8 281 29.5
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.4e-12 77.8 173 39.3
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.9e-12 77.4 260 36.9
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 1.9e-12 77.4 166 33.7
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 1.9e-12 77.4 277 33.2
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.9e-12 77.4 165 33.3
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 3.2e-12 76.6 158 36.7
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.2e-11 74.7 255 37.6
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 2.1e-11 73.9 180 33.9
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 3.5e-11 73.2 178 31.5
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 4.6e-11 72.8 160 48.8
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 4.6e-11 72.8 256 36.3
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 6.1e-11 72.4 259 32.8
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 6.1e-11 72.4 150 38.7
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 7.9e-11 72.0 259 31.3
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 7.9e-11 72.0 262 30.2
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 1.0e-10 71.6 220 36.8
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.8e-10 70.9 259 31.7
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 2.3e-10 70.5 305 38.0
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 3.0e-10 70.1 163 38.0
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 3.0e-10 70.1 92 44.6
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 6.7e-10 68.9 270 29.3
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.1e-09 68.2 211 33.2
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.1e-09 68.2 153 35.3
HPP92_000797 Vanilla planifolia HOM05D004206 ORTHO05D003325 1.5e-09 67.8 114 41.2
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 3.3e-09 66.6 142 37.3
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 4.3e-09 66.2 80 42.5
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 5.7e-09 65.9 143 34.3
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 5.7e-09 65.9 136 35.3
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 1.3e-08 64.7 276 31.9
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 1.6e-08 64.3 156 34.0
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 2.2e-08 63.9 264 33.3
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.8e-08 63.5 135 48.9
Zm00001eb149900 Zea mays HOM05D033995 ORTHO05D003325 2.8e-08 63.5 88 40.9
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 4.8e-08 62.8 159 34.0
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 4.8e-08 62.8 255 31.0
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 4.8e-08 62.8 172 29.7
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.8e-08 62.8 141 53.9
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 8.2e-08 62.0 109 36.7
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 8.2e-08 62.0 144 45.1
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 1.1e-07 61.6 276 37.0
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 4.1e-07 59.7 237 28.7
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 5.3e-07 59.3 63 50.8
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 9.0e-07 58.5 137 35.8
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 1.2e-06 58.2 67 50.7
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 1.5e-06 57.8 298 26.5
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 1.5e-06 57.8 63 50.8
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.0e-06 57.4 156 35.9
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 2.0e-06 57.4 55 52.7
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 3.4e-06 56.6 275 33.8
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 4.5e-06 56.2 129 37.2
Os01g0814400 Oryza sativa ssp. japonica HOM05D033995 ORTHO05D003325 4.5e-06 56.2 93 39.8
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.9e-06 55.8 47 57.4
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 5.9e-06 55.8 99 36.4
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 5.9e-06 55.8 99 36.4
HPP92_009483 Vanilla planifolia HOM05D004206 ORTHO05D003325 1.0e-05 55.1 126 35.7


User provided reference genes

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