Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 8.2e-106 387.1 201 100.0
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 2.4e-97 359.0 201 94.5
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.0e-79 300.4 249 69.1
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 9.4e-78 293.9 202 79.2
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.0e-51 206.5 202 59.9
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.3e-47 193.0 202 55.9
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 4.7e-45 185.3 202 56.9
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.4e-44 183.7 202 55.9
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.3e-44 183.0 201 57.7
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 1.2e-43 180.6 196 58.2
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 1.5e-43 180.3 201 55.2
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 6.4e-42 174.9 205 56.6
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.1e-41 172.2 196 52.0
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 5.4e-41 171.8 205 55.6
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 3.5e-40 169.1 204 54.9
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 6.0e-40 168.3 205 53.2
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 7.8e-40 167.9 195 51.8
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.0e-39 167.5 206 52.9
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.0e-39 167.5 196 52.6
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.0e-39 167.5 196 52.0
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.3e-39 167.2 177 60.5
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 2.3e-39 166.4 202 53.5
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 3.9e-39 165.6 183 54.6
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 5.1e-39 165.2 196 51.5
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.1e-38 164.1 213 55.4
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.1e-38 164.1 195 49.2
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 2.5e-38 162.9 196 53.6
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 3.3e-38 162.5 211 51.7
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 3.3e-38 162.5 196 50.0
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 1.6e-37 160.2 191 54.5
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 2.1e-37 159.8 195 52.8
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.6e-37 159.1 201 52.2
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-36 157.1 201 49.3
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.4e-36 157.1 199 49.2
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.8e-36 156.8 201 52.7
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.8e-36 156.8 201 48.8
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.8e-36 156.8 201 56.7
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 3.1e-36 156.0 198 52.0
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 5.2e-36 155.2 199 49.2
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 5.2e-36 155.2 207 51.2
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.2e-35 154.1 201 48.8
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 1.2e-35 154.1 196 50.5
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.5e-35 153.7 200 49.5
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.4e-35 152.5 200 50.5
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 4.4e-35 152.1 206 51.0
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 5.8e-35 151.8 197 50.8
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 7.5e-35 151.4 198 51.0
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 9.9e-35 151.0 210 51.0
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 2.2e-34 149.8 200 51.0
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 3.7e-34 149.1 191 51.3
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 4.9e-34 148.7 210 49.5
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.4e-33 147.1 161 54.0
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.9e-33 146.7 200 49.5
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.9e-33 146.7 213 50.2
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 2.4e-33 146.4 198 50.0
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.4e-33 146.4 196 49.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.4e-33 146.4 200 49.0
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-33 145.6 208 49.0
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-33 145.6 208 49.0
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-33 145.6 208 49.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 5.4e-33 145.2 200 49.0
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.1e-33 144.8 208 49.5
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 7.1e-33 144.8 200 52.0
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.2e-32 144.1 208 48.6
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 2.1e-32 143.3 197 50.8
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.5e-32 142.5 199 48.7
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 6.0e-32 141.7 199 47.2
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 6.0e-32 141.7 199 47.2
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 6.0e-32 141.7 199 47.2
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 6.0e-32 141.7 179 49.2
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.0e-31 141.0 200 50.0
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.3e-31 140.6 200 48.0
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 5.1e-31 138.7 199 51.3
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 6.6e-31 138.3 200 49.0
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.6e-31 138.3 197 48.2
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 6.6e-31 138.3 203 46.3
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 8.6e-31 137.9 196 49.0
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 2.5e-30 136.3 191 48.2
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 4.3e-30 135.6 202 46.0
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.6e-30 135.2 199 48.2
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 5.6e-30 135.2 194 49.5
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 7.3e-30 134.8 140 57.9
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 9.5e-30 134.4 197 46.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.6e-29 133.7 205 47.8
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 2.1e-29 133.3 200 47.0
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 3.6e-29 132.5 181 46.4
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 3.6e-29 132.5 172 51.2
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 8.1e-29 131.3 164 51.2
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 1.4e-28 130.6 165 51.5
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.4e-28 130.6 198 50.0
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 2.4e-28 129.8 201 44.8
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.4e-28 129.8 162 51.2
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 3.1e-28 129.4 165 52.1
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 3.1e-28 129.4 171 50.3
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.8e-28 128.3 213 44.6
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 8.9e-28 127.9 166 51.2
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 2.0e-27 126.7 201 43.8
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.0e-27 126.7 210 46.7
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 3.4e-27 125.9 163 55.2
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 4.4e-27 125.6 197 45.2
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 5.8e-27 125.2 187 48.1
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.3e-26 124.0 209 46.9
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.3e-26 124.0 141 58.9
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.3e-26 124.0 202 44.1
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 1.3e-26 124.0 210 42.4
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 4.9e-26 122.1 191 44.5
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.1e-25 120.9 203 42.4
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 1.1e-25 120.9 207 44.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.4e-25 120.6 175 48.6
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.4e-25 120.6 206 43.7
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.4e-25 118.6 206 42.7
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 7.1e-25 118.2 173 47.4
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 9.2e-25 117.9 201 43.3
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.6e-24 117.1 173 47.4
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 2.1e-24 116.7 205 42.9
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 3.5e-24 115.9 129 56.6
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 3.5e-24 115.9 202 45.0
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 4.6e-24 115.5 159 49.1
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 1.3e-23 114.0 211 43.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.3e-23 114.0 206 41.7
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.7e-23 113.6 208 42.3
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 2.3e-23 113.2 203 43.3
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 3.0e-23 112.8 193 44.0
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 1.5e-22 110.5 211 42.2
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.5e-22 109.8 188 42.6
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.5e-22 109.8 213 40.4
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.2e-21 107.5 222 41.0
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 1.6e-21 107.1 209 38.8
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.1e-21 106.7 201 40.8
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 2.1e-21 106.7 191 42.9
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 2.8e-21 106.3 209 38.8
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 3.6e-21 105.9 125 56.0
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 6.2e-21 105.1 202 44.1
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 6.2e-21 105.1 209 38.3
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.4e-20 104.0 154 46.8
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 1.4e-20 104.0 126 50.8
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.4e-20 103.2 162 43.2
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 3.1e-20 102.8 125 51.2
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 5.3e-20 102.1 207 37.2
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 6.9e-20 101.7 130 54.6
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 6.9e-20 101.7 133 54.9
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 9.0e-20 101.3 84 67.9
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.2e-19 100.9 194 47.9
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.5e-19 100.5 133 54.1
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.5e-19 100.5 208 41.3
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 3.4e-19 99.4 157 45.2
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 5.8e-19 98.6 157 47.1
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 7.6e-19 98.2 156 46.2
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 9.9e-19 97.8 177 38.4
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 1.3e-18 97.4 201 38.3
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.8e-18 95.9 207 40.1
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 4.9e-18 95.5 175 40.6
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 6.4e-18 95.1 182 39.6
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 3.2e-17 92.8 170 46.5
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 1.2e-16 90.9 167 43.7
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 6.0e-16 88.6 156 43.6
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 7.8e-16 88.2 208 37.0
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 3.0e-15 86.3 217 37.3
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 1.3e-13 80.9 132 47.0
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 4.8e-13 79.0 175 39.4
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 4.8e-13 79.0 163 34.4
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 8.1e-13 78.2 165 37.6
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 1.4e-12 77.4 107 53.3
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 1.4e-12 77.4 145 42.8
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.8e-12 77.0 157 40.1
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 1.8e-12 77.0 151 41.1
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 2.4e-12 76.6 165 35.8
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 4.0e-12 75.9 157 38.2
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 2.6e-11 73.2 147 41.5
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 2.6e-11 73.2 176 39.8
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 4.5e-11 72.4 155 38.7
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 5.8e-11 72.0 173 37.6
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 5.8e-11 72.0 145 40.0
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 9.9e-11 71.2 156 37.8
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 9.9e-11 71.2 159 39.6
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 1.2e-08 64.3 122 43.4
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 2.3e-07 60.1 184 35.3
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 6.7e-07 58.5 58 58.6
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 3.3e-06 56.2 169 33.7


User provided reference genes

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