Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 4.2e-78 294.7 152 100.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.6e-48 195.7 152 72.4
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.3e-39 166.8 153 67.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.7e-39 166.4 153 68.0
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.1e-29 132.9 152 52.6
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.7e-29 132.5 144 54.2
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.8e-28 129.8 153 51.6
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 4.0e-28 128.6 150 52.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.2e-27 127.1 155 53.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.0e-27 126.3 152 52.6
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.6e-27 125.9 155 51.0
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 3.4e-27 125.6 154 50.6
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.7e-27 124.8 151 49.7
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 7.5e-27 124.4 151 49.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 9.8e-27 124.0 149 53.0
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 9.8e-27 124.0 156 52.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.3e-26 123.6 155 52.3
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.3e-26 123.6 153 52.3
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.3e-26 123.6 153 52.3
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 2.2e-26 122.9 153 52.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 2.2e-26 122.9 153 52.9
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.2e-26 122.9 153 51.0
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.8e-26 122.5 153 51.0
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.8e-26 122.5 151 48.3
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.8e-26 121.7 151 50.3
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 4.8e-26 121.7 153 51.0
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 8.3e-26 120.9 151 48.3
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.1e-25 120.6 151 49.7
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.1e-25 120.6 151 49.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.1e-25 120.6 152 50.7
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.1e-25 120.6 156 52.6
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-25 120.2 153 49.7
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.8e-25 119.8 150 50.7
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.4e-25 119.4 153 49.7
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.4e-25 119.4 153 49.7
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 4.1e-25 118.6 153 49.0
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.1e-25 118.6 156 51.3
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.4e-25 118.2 156 51.3
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 7.0e-25 117.9 152 50.0
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 7.0e-25 117.9 152 50.0
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.0e-25 117.9 153 51.6
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 9.1e-25 117.5 153 49.7
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.2e-24 117.1 153 52.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.2e-24 117.1 145 49.0
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.6e-24 116.7 145 50.3
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.0e-24 116.3 150 50.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.7e-24 115.9 153 51.0
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.7e-24 115.9 155 47.7
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 3.5e-24 115.5 152 51.3
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.5e-24 115.5 112 59.8
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 4.5e-24 115.2 113 57.5
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.9e-24 114.8 156 49.4
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 5.9e-24 114.8 153 50.3
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 5.9e-24 114.8 150 48.7
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.0e-23 114.0 151 47.7
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.3e-23 113.6 107 58.9
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.2e-23 112.8 115 53.9
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 2.2e-23 112.8 112 58.0
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 3.8e-23 112.1 153 49.7
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 3.8e-23 112.1 108 55.6
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 3.8e-23 112.1 152 49.3
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 5.0e-23 111.7 108 57.4
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 5.0e-23 111.7 145 46.9
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 5.0e-23 111.7 153 48.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 6.5e-23 111.3 113 52.2
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 6.5e-23 111.3 108 57.4
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 6.5e-23 111.3 151 49.0
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.5e-22 110.2 108 55.6
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.9e-22 109.8 108 57.4
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.9e-22 109.8 112 54.5
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 4.2e-22 108.6 117 51.3
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.2e-22 108.6 110 56.4
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.2e-22 108.6 119 52.1
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.2e-22 108.6 119 52.1
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 7.2e-22 107.8 121 54.5
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 7.2e-22 107.8 149 47.0
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 9.5e-22 107.5 112 54.5
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.2e-21 107.1 102 59.8
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.2e-21 107.1 110 55.5
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.6e-21 106.7 111 55.0
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 3.6e-21 105.5 102 59.8
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 3.6e-21 105.5 102 59.8
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 3.6e-21 105.5 102 59.8
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 4.7e-21 105.1 145 45.5
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.7e-21 105.1 150 48.7
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.1e-21 104.8 102 56.9
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.0e-21 104.4 97 58.8
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 8.0e-21 104.4 162 45.1
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.0e-20 104.0 102 58.8
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.0e-20 104.0 102 56.9
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.4e-20 103.6 152 46.7
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.4e-20 103.6 152 46.7
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.4e-20 103.6 113 54.0
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.8e-20 103.2 113 54.9
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 3.0e-20 102.4 110 53.6
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.0e-20 102.1 113 54.9
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.2e-20 101.7 151 45.7
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.2e-20 101.7 151 45.7
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.2e-20 101.7 151 45.7
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.2e-20 101.7 110 53.6
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 6.8e-20 101.3 150 46.7
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 6.8e-20 101.3 123 50.4
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 6.8e-20 101.3 110 52.7
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 6.8e-20 101.3 110 52.7
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 8.8e-20 100.9 113 54.0
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 8.8e-20 100.9 107 55.1
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.5e-19 100.1 152 44.7
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 3.4e-19 99.0 151 45.7
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 3.4e-19 99.0 151 45.7
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.4e-19 99.0 102 55.9
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.4e-19 99.0 151 41.7
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.5e-19 97.8 113 53.1
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.3e-18 97.1 152 44.7
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.7e-18 96.7 102 53.9
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.7e-18 96.7 105 52.4
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.2e-18 96.3 105 51.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.2e-18 96.3 95 55.8
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.3e-18 94.7 97 54.6
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 8.3e-18 94.4 149 42.3
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 5.4e-17 91.7 108 50.9
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.0e-16 89.7 60 73.3
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.7e-15 86.7 62 72.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.3e-15 86.3 62 71.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.9e-15 85.9 90 52.2
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-14 82.8 44 84.1
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 7.3e-14 81.3 86 53.5
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 9.5e-14 80.9 120 42.5
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.2e-13 80.5 102 45.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.2e-13 80.5 43 79.1
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.1e-13 79.7 101 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.8e-12 76.6 102 43.1
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.3e-12 76.3 50 72.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.6e-11 72.8 115 41.7
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 4.1e-09 65.5 125 35.2
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 5.4e-09 65.1 150 36.0
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 7.3e-06 54.7 68 51.5


User provided reference genes

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