Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 3.7e-42 174.5 90 100.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 3.9e-39 164.5 88 98.9
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 3.3e-38 161.4 90 94.4
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 2.8e-29 131.7 90 81.1
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 3.0e-23 111.7 96 66.7
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.4e-20 102.1 95 65.3
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 5.2e-20 100.9 91 63.7
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 8.9e-20 100.1 96 63.5
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.2e-19 99.8 90 62.2
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 2.0e-19 99.0 92 66.3
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 3.4e-19 98.2 92 62.0
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 9.9e-19 96.7 92 59.8
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 2.2e-18 95.5 99 56.6
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.8e-18 94.7 105 54.3
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 6.4e-18 94.0 94 61.7
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 1.1e-17 93.2 94 56.4
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 3.2e-17 91.7 102 54.9
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 3.2e-17 91.7 98 58.2
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 4.2e-17 91.3 96 57.3
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 5.4e-17 90.9 104 53.8
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.2e-16 89.7 97 57.7
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.2e-16 89.7 97 59.8
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 2.1e-16 89.0 91 57.1
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.1e-16 89.0 95 58.9
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 2.1e-16 89.0 84 61.9
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 2.7e-16 88.6 100 56.0
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 3.5e-16 88.2 93 55.9
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 3.5e-16 88.2 84 58.3
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.3e-15 86.3 102 52.9
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.3e-15 86.3 104 51.0
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 3.0e-15 85.1 103 54.4
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 3.0e-15 85.1 103 54.4
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 3.9e-15 84.7 104 51.0
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 3.9e-15 84.7 105 54.3
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.1e-15 84.3 94 56.4
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 5.1e-15 84.3 95 56.8
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.6e-15 84.0 96 55.2
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 6.6e-15 84.0 99 52.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 8.7e-15 83.6 94 57.4
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.5e-14 82.8 90 55.6
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.5e-14 82.8 98 54.1
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.9e-14 82.4 98 54.1
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 2.5e-14 82.0 94 58.5
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 2.5e-14 82.0 89 58.4
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.5e-14 82.0 101 54.5
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.3e-14 81.6 90 55.6
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 5.6e-14 80.9 94 55.3
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 9.6e-14 80.1 106 48.1
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.2e-13 79.7 84 60.7
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 1.2e-13 79.7 87 57.5
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.2e-13 79.7 99 51.5
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 2.1e-13 79.0 93 52.7
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 2.8e-13 78.6 85 57.6
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.8e-13 78.6 89 52.8
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.1e-13 77.0 101 51.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.1e-13 77.0 101 51.5
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.1e-12 76.6 101 48.5
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.1e-12 76.6 87 51.7
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 4.0e-12 74.7 98 52.0
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 6.9e-12 73.9 86 54.7
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.2e-11 73.2 87 50.6
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.5e-11 72.8 101 49.5
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 3.4e-11 71.6 96 47.9
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 4.4e-11 71.2 93 47.3
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.4e-11 71.2 87 49.4
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 3.8e-10 68.2 71 56.3
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.4e-09 65.5 100 44.0
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 3.5e-08 61.6 95 43.2
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 3.5e-08 61.6 77 51.9
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 6.0e-08 60.8 102 50.0
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.3e-07 59.7 81 48.1
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.3e-07 59.7 102 48.0
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.7e-07 59.3 94 43.6
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 1.7e-07 59.3 91 46.2
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 2.3e-07 58.9 92 48.9
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 2.3e-07 58.9 71 53.5
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 2.3e-07 58.9 48 60.4
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.9e-07 58.2 82 48.8
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 5.1e-07 57.8 79 51.9
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 6.6e-07 57.4 72 48.6
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 1.1e-06 56.6 87 48.3
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 1.9e-06 55.8 81 50.6
Medtr2g104750 Medicago truncatula HOM05D007574 ORTHO05D007552 2.5e-06 55.5 85 45.9
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 5.6e-06 54.3 85 43.5
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 5.6e-06 54.3 79 45.6
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 5.6e-06 54.3 90 41.1


User provided reference genes

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