Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.2e-266 921.8 487 100.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.5e-254 880.2 499 94.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 3.1e-236 821.6 510 88.2
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 6.5e-165 584.7 429 75.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 6.5e-165 584.7 438 75.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 8.0e-123 444.9 504 56.0
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 7.8e-118 428.3 501 55.3
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.7e-117 427.2 500 51.4
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.5e-116 424.1 505 53.7
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.6e-115 420.6 482 54.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.4e-114 417.5 505 50.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-114 416.8 510 50.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.2e-113 414.5 498 54.0
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.9e-112 409.1 508 49.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-110 404.4 503 49.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.6e-110 404.1 504 50.8
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.6e-110 404.1 503 49.9
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.0e-110 403.7 506 50.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.6e-110 402.5 509 52.1
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 5.9e-110 402.1 505 51.5
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.0e-109 401.4 498 49.8
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 3.9e-109 399.4 508 48.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 5.6e-108 395.6 490 52.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 9.5e-108 394.8 504 51.6
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.8e-107 393.3 498 49.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.8e-107 393.3 498 50.8
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.8e-106 388.7 503 50.9
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.3e-101 374.4 500 49.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-101 373.6 521 45.9
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.3e-101 373.6 517 46.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 6.6e-101 372.1 500 48.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.5e-100 370.2 508 47.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.6e-99 367.5 518 46.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.8e-99 366.7 505 48.7
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-98 364.8 505 45.5
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.4e-98 364.4 505 45.5
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.4e-97 359.4 489 47.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 9.9e-97 358.2 496 48.2
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.7e-96 357.5 501 47.7
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.2e-96 357.1 502 48.6
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 6.4e-96 355.5 499 46.1
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 4.1e-95 352.8 505 46.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 7.8e-94 348.6 500 45.6
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 4.3e-92 342.8 505 45.1
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.6e-92 342.4 519 43.7
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.6e-92 342.4 498 46.4
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-90 338.2 496 46.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.3e-90 337.0 503 45.7
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 8.9e-90 335.1 513 45.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.5e-89 334.3 503 43.3
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.4e-89 332.8 485 45.2
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 5.8e-89 332.4 502 46.0
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.8e-88 329.7 459 50.5
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.8e-88 329.7 489 45.4
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 5.1e-85 319.3 511 43.8
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.6e-85 318.9 511 44.2
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.6e-85 318.5 434 47.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.5e-84 317.0 514 46.1
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.3e-84 316.6 495 44.4
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.1e-83 313.9 506 46.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.8e-82 310.8 512 42.4
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.8e-82 310.8 505 43.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 9.0e-82 308.5 514 43.4
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 9.0e-82 308.5 496 43.5
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 5.8e-81 305.8 512 43.8
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 9.9e-81 305.1 507 42.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.7e-80 304.3 496 43.3
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.2e-80 303.9 501 42.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 4.9e-80 302.8 510 45.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.4e-80 302.4 510 43.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.1e-79 301.6 483 44.5
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.2e-79 300.1 512 43.6
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 4.2e-79 299.7 388 46.9
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.1e-78 297.4 509 43.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 5.1e-77 292.7 509 42.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.5e-76 290.4 502 39.4
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 3.3e-76 290.0 496 39.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.6e-76 289.3 498 42.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 4.8e-75 286.2 517 41.4
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 6.2e-75 285.8 497 41.2
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 8.1e-75 285.4 517 41.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.5e-73 281.2 509 40.5
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.6e-73 280.4 449 45.7
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.6e-73 280.4 496 38.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 3.4e-73 280.0 470 44.7
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 7.6e-73 278.9 505 38.4
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 9.9e-73 278.5 502 39.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.4e-71 272.7 544 39.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.6e-70 269.6 499 38.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.3e-69 268.1 484 43.8
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 8.7e-69 265.4 496 39.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.1e-67 260.8 483 39.5
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.7e-67 260.0 502 40.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 9.0e-66 255.4 523 37.9
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.9e-65 251.9 400 41.0
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 3.8e-64 250.0 512 39.3
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.9e-64 249.6 446 41.3
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.4e-64 249.2 431 41.1
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.3e-63 245.4 437 40.3
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.6e-62 244.6 406 43.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.7e-62 243.8 484 40.7
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 6.0e-62 242.7 495 37.0
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 7.9e-62 242.3 513 38.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.9e-62 242.3 404 42.8
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-60 238.4 513 37.4
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 9.6e-60 235.3 441 40.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.6e-59 234.6 528 36.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.2e-57 228.4 473 37.2
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 6.5e-56 222.6 458 37.6
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 8.4e-56 222.2 421 39.2
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 7.9e-54 215.7 419 38.9
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.0e-53 215.3 509 38.5
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.0e-53 213.8 510 35.9
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-52 211.5 420 38.8
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.5e-52 211.5 427 37.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.9e-52 211.1 503 38.6
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.9e-52 211.1 488 37.1
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 5.7e-52 209.5 427 37.9
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 7.4e-52 209.1 427 38.2
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.8e-50 204.5 270 47.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 2.4e-50 204.1 412 37.9
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.3e-50 203.0 417 38.4
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 9.0e-50 202.2 488 34.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.0e-49 201.1 412 37.6
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-48 198.7 444 36.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 5.0e-48 196.4 446 36.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-47 193.0 434 38.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.2e-47 192.6 493 35.1
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 5.1e-45 186.4 447 35.6
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-44 185.3 343 41.7
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.5e-44 184.9 455 34.9
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 9.7e-44 182.2 431 34.6
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.8e-43 180.6 439 33.0
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 9.1e-42 175.6 397 35.8
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.6e-41 174.1 338 38.2
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.4e-41 173.7 325 38.8
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.4e-39 168.3 464 33.0
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 3.2e-39 167.2 291 40.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.5e-36 158.3 476 30.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.0e-36 157.9 367 37.1
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 2.2e-35 154.5 213 44.6
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.7e-35 153.7 403 32.8
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 3.1e-34 150.6 144 55.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 2.0e-33 147.9 139 53.2
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.9e-32 144.1 165 47.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.4e-31 141.7 145 59.3
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.9e-31 141.4 446 31.4
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.6e-30 138.3 432 30.6
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.8e-29 134.8 224 43.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 2.6e-28 131.0 501 30.1
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.0e-25 121.3 134 56.7
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.6e-22 111.7 525 29.5
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 4.7e-22 110.2 267 36.0
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.0e-20 104.8 112 52.7
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 9.7e-20 102.4 116 50.0
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 4.8e-19 100.1 507 25.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.9e-16 90.9 203 33.0
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.8e-16 90.5 100 48.0
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.1e-15 89.0 394 27.9
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.5e-15 86.7 410 28.3
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.2e-12 79.0 98 44.9
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-12 78.6 299 28.4
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-12 78.6 98 48.0
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 2.0e-12 78.2 202 34.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.6e-12 77.8 174 37.9
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.6e-12 77.8 387 27.9
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.8e-12 75.9 370 28.1
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.2e-11 74.7 89 50.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 2.8e-11 74.3 100 42.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.8e-11 74.3 110 43.6
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 6.3e-11 73.2 60 58.3
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 5.0e-08 63.5 103 39.8
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 5.5e-07 60.1 74 40.5
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 8.0e-06 56.2 68 44.1


User provided reference genes

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