Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 4.5e-36 154.1 78 100.0
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.7e-31 137.1 78 87.2
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.3e-27 125.9 78 79.5
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 3.8e-27 124.4 78 80.8
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 5.0e-27 124.0 78 79.5
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 5.0e-27 124.0 78 79.5
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 5.0e-27 124.0 78 79.5
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 6.5e-27 123.6 78 78.2
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 5.5e-26 120.6 78 76.9
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 2.1e-25 118.6 78 73.1
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 8.0e-25 116.7 78 71.8
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.4e-24 115.9 78 74.4
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.4e-24 115.9 78 74.4
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.4e-24 115.9 78 74.4
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.4e-24 115.9 78 70.5
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.8e-24 115.5 78 70.5
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 4.0e-24 114.4 78 75.6
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.2e-24 114.0 78 71.8
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 6.8e-24 113.6 78 70.5
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 8.8e-24 113.2 79 72.2
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 8.8e-24 113.2 78 71.8
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 1.5e-23 112.5 78 73.1
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.5e-23 112.5 79 69.6
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.5e-23 112.5 79 69.6
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.5e-23 112.5 79 69.6
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.5e-23 112.5 79 69.6
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.0e-23 112.1 79 68.4
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 2.6e-23 111.7 78 69.2
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 2.6e-23 111.7 75 70.7
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.4e-23 110.9 78 75.6
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 5.7e-23 110.5 79 68.4
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 5.7e-23 110.5 79 68.4
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 5.7e-23 110.5 79 68.4
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 7.5e-23 110.2 79 67.1
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 7.5e-23 110.2 79 67.1
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 7.5e-23 110.2 79 67.1
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 7.5e-23 110.2 78 67.9
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 7.5e-23 110.2 78 69.2
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.3e-22 109.4 79 68.4
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 2.2e-22 108.6 77 67.5
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.8e-22 108.2 79 65.8
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.8e-22 108.2 79 65.8
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 2.8e-22 108.2 79 67.1
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 2.8e-22 108.2 79 67.1
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 69.2
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.8e-22 108.2 72 72.2
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.9e-22 107.5 79 65.8
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 5.4e-21 104.0 76 71.1
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 60.3
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 62.8
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 5.9e-20 100.5 79 62.0
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 62.0
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 62.0
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.3e-19 99.4 78 65.4
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.7e-19 99.0 78 64.1
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 2.3e-19 98.6 78 62.8
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 2.9e-19 98.2 79 59.5
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 3.8e-19 97.8 77 62.3
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 5.0e-19 97.4 78 64.1
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 5.0e-19 97.4 78 64.1
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.5e-18 95.9 77 61.0
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 59.5
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 58.2
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.9e-18 95.5 78 60.3
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.9e-18 95.5 79 60.8
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 3.3e-18 94.7 79 57.0
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.3e-18 94.7 78 60.3
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 5.5e-18 94.0 78 59.0
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.2e-18 93.6 78 59.0
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 7.2e-18 93.6 78 60.3
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 9.5e-18 93.2 78 60.3
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 9.5e-18 93.2 78 57.7
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 9.5e-18 93.2 78 59.0
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 59.0
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 59.0
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 60.3
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 60.3
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.2e-17 92.8 74 63.5
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 60.3
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.6e-17 92.4 78 59.0
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.6e-17 92.4 78 60.3
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 60.3
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 60.3
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 59.0
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 59.0
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 2.1e-17 92.0 76 61.8
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 59.0
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 59.0
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 59.0
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 2.8e-17 91.7 78 59.0
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 60.3
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 57.7
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 59.0
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 59.0
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 57.7
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 60.3
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 4.7e-17 90.9 61 75.4
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 59.0
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 57.7
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 59.0
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 57.7
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.1e-17 90.5 78 59.0
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 6.1e-17 90.5 78 59.0
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 57.7
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 61.5
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 1.0e-16 89.7 78 59.0
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.0e-16 89.7 78 57.7
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.0e-16 89.7 78 59.0
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 1.4e-16 89.4 77 57.1
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 56.4
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 59.0
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 57.7
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 57.7
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 59.0
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.4e-16 89.4 79 58.2
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 57.7
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 59.0
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 59.0
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 59.0
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 59.0
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 53.8
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.8e-16 89.0 78 56.4
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 2.3e-16 88.6 78 53.8
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 2.3e-16 88.6 78 57.7
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 3.0e-16 88.2 79 58.2
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 3.0e-16 88.2 78 57.7
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 4.0e-16 87.8 78 53.8
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.0e-16 87.8 78 56.4
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 5.2e-16 87.4 78 57.7
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 5.2e-16 87.4 78 57.7
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 5.2e-16 87.4 78 59.0
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 8.9e-16 86.7 78 56.4
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 8.9e-16 86.7 79 57.0
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 8.9e-16 86.7 78 56.4
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 8.9e-16 86.7 78 56.4
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 8.9e-16 86.7 74 56.8
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 56.4
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 57.7
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 57.7
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 57.7
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 2.6e-15 85.1 78 53.8
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.6e-15 85.1 78 55.1
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.6e-15 85.1 78 55.1
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 3.4e-15 84.7 78 55.1
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 5.7e-15 84.0 78 56.4
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 7.5e-15 83.6 78 55.1
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 7.5e-15 83.6 78 55.1
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 9.8e-15 83.2 78 51.3
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 1.3e-14 82.8 74 55.4
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.7e-14 82.4 74 54.1
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.2e-14 82.0 78 52.6
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.9e-14 81.6 77 51.9
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.9e-14 81.6 76 55.3
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 2.9e-14 81.6 75 52.0
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 8.3e-14 80.1 78 50.0
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.4e-13 78.6 73 56.2
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 4.1e-13 77.8 78 56.4
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 9.2e-13 76.6 78 53.8
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.6e-12 74.3 63 60.3
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 7.8e-12 73.6 78 51.3
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.3e-11 72.8 70 57.1
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 2.3e-11 72.0 78 52.6
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 3.3e-10 68.2 58 56.9
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 2.8e-09 65.1 72 45.8
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 6.2e-09 63.9 56 53.6
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 8.0e-09 63.5 64 51.6
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 2.0e-07 58.9 43 62.8
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.0e-07 58.9 71 53.5
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 2.0e-07 58.9 80 41.2
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 1.7e-06 55.8 51 51.0
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 3.7e-06 54.7 80 41.2
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 4.9e-06 54.3 78 46.2
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.9e-06 54.3 41 61.0
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 8.3e-06 53.5 49 49.0


User provided reference genes

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