Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.0e-238 829.7 420 100.0
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.7e-217 759.2 472 84.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 9.1e-208 726.9 493 79.3
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.0e-158 563.9 427 71.0
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 2.4e-144 516.2 507 59.0
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 3.2e-144 515.8 504 58.9
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.2e-143 513.8 506 58.1
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 3.9e-142 508.8 495 57.4
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 5.1e-142 508.4 496 58.1
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 6.6e-142 508.1 504 58.3
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.8e-140 502.7 495 56.6
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.8e-140 501.9 481 56.3
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.0e-138 496.5 481 57.2
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 2.6e-138 496.1 476 59.5
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 3.4e-138 495.7 491 57.8
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.5e-138 495.4 474 57.8
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.2e-137 493.0 473 57.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.9e-137 491.9 494 56.9
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.2e-135 487.3 505 56.2
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 3.5e-135 485.7 495 55.4
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 8.7e-134 481.1 503 56.5
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 9.6e-133 477.6 495 54.7
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 3.7e-132 475.7 491 53.2
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.4e-131 473.8 499 57.1
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.4e-131 473.0 473 57.5
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 3.1e-131 472.6 495 56.6
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.2e-130 470.7 460 57.0
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 2.0e-130 469.9 458 57.0
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.6e-130 469.5 492 55.7
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 3.8e-129 465.7 459 56.6
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.1e-128 464.2 478 57.1
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 9.3e-128 461.1 485 54.6
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.2e-127 460.7 461 55.5
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 2.1e-127 459.9 476 55.5
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 2.3e-126 456.4 478 54.6
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.9e-126 455.7 507 53.5
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.5e-125 453.8 507 53.6
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 2.5e-125 453.0 502 53.4
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 9.6e-125 451.1 527 52.9
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 2.1e-124 449.9 507 52.9
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.1e-123 446.0 435 57.7
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 9.0e-123 444.5 424 58.3
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 5.8e-122 441.8 462 55.0
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 5.8e-122 441.8 524 53.2
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 7.6e-122 441.4 456 58.3
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 7.6e-122 441.4 460 55.4
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 2.9e-121 439.5 476 53.4
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.9e-121 439.5 476 53.4
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.9e-121 439.5 476 53.4
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.9e-121 439.5 476 53.4
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.3e-120 434.5 476 52.5
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 6.0e-119 431.8 456 55.5
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.0e-118 431.0 473 52.4
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 2.3e-118 429.9 456 55.0
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 8.7e-118 427.9 444 54.1
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 7.4e-117 424.9 524 50.6
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 9.7e-117 424.5 445 56.2
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.1e-115 421.0 469 51.4
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.8e-115 420.2 507 50.7
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 2.4e-115 419.9 460 53.5
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 3.1e-115 419.5 503 51.1
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 3.8e-113 412.5 463 52.9
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 6.5e-113 411.8 510 49.6
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 6.5e-113 411.8 369 58.3
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 7.2e-112 408.3 412 54.9
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.8e-110 403.7 463 52.9
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 5.1e-110 402.1 382 55.2
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 5.1e-110 402.1 598 45.3
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 6.7e-110 401.7 388 55.4
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.3e-108 397.5 388 54.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.8e-107 393.7 452 51.8
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.4e-106 389.4 447 51.9
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.3e-105 387.5 472 51.1
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.3e-105 387.5 448 52.2
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 1.3e-105 387.5 465 50.3
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.9e-105 386.3 468 48.7
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.1e-104 384.4 407 54.5
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 2.7e-103 379.8 473 50.7
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.7e-100 369.4 382 52.4
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.4e-99 367.5 439 51.3
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.8e-99 367.1 435 50.8
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.1e-96 357.8 507 46.0
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 9.4e-96 354.8 437 49.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.6e-95 354.0 379 53.0
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 3.0e-94 349.7 341 56.6
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.0e-90 337.0 343 55.7
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 4.5e-90 335.9 354 54.8
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 5.9e-90 335.5 334 56.0
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 7.7e-90 335.1 350 55.4
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 5.0e-89 332.4 345 55.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 3.2e-88 329.7 345 55.1
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 9.4e-88 328.2 403 48.4
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 2.1e-87 327.0 292 62.0
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 4.7e-87 325.9 356 52.8
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 4.7e-87 325.9 348 54.9
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.4e-86 324.3 339 55.2
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.8e-86 323.9 341 55.7
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 2.3e-86 323.6 344 54.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 4.0e-86 322.8 465 44.3
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 5.2e-86 322.4 427 49.2
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.3e-85 319.7 410 49.3
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 5.7e-85 318.9 417 46.5
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 8.2e-84 315.1 504 42.5
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.0e-82 310.5 509 42.2
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.2e-79 301.2 439 44.4
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 2.6e-77 293.5 375 48.3
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 3.7e-76 289.7 350 50.9
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 6.3e-76 288.9 434 46.1
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 7.0e-75 285.4 451 42.4
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.7e-73 280.8 398 46.7
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.5e-72 276.9 384 44.3
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.3e-72 276.6 392 47.7
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.4e-70 271.2 341 47.5
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 3.5e-66 256.5 428 44.9
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 5.9e-66 255.8 371 43.1
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.5e-64 250.4 404 45.3
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 2.5e-64 250.4 464 38.4
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.7e-60 237.7 315 46.3
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 4.1e-59 233.0 342 45.3
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 7.0e-59 232.3 256 52.3
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.6e-57 225.7 390 41.3
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.4e-54 218.0 427 39.1
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.6e-50 204.5 307 42.7
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 3.5e-50 203.4 229 46.7
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 6.2e-47 192.6 225 47.6
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.4e-43 180.6 108 80.6
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 9.9e-37 158.7 362 38.4
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 6.0e-34 149.4 189 47.1
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.9e-33 146.7 150 46.7
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 8.1e-31 139.0 223 34.1
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.0e-30 136.7 226 35.8
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.2e-28 131.0 166 41.6
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 4.9e-28 129.8 217 42.4
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 4.2e-27 126.7 92 63.0
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.6e-25 119.4 86 69.8
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.9e-24 117.9 106 47.2
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.3e-20 105.1 152 44.7
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.4e-19 101.7 69 73.9
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.3e-08 63.9 53 73.6


User provided reference genes

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