Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.5e-198 695.3 356 100.0
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 4.6e-176 621.3 358 90.8
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.1e-148 530.4 366 78.4
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 8.8e-95 351.3 377 59.7
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.2e-45 187.2 414 37.0
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 8.4e-45 185.3 416 35.3
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 1.7e-42 177.6 416 34.1
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 5.1e-42 176.0 408 35.5
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.1e-40 170.6 437 33.4
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 3.6e-40 169.9 422 33.4
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 6.2e-40 169.1 404 35.1
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.8e-39 167.5 403 36.0
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 4.0e-39 166.4 430 34.0
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.5e-38 164.5 413 33.7
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.5e-38 164.5 385 34.3
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.9e-37 159.5 385 35.8
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.4e-37 159.1 385 33.5
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 8.4e-37 158.7 419 34.4
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.4e-36 157.9 416 34.1
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.4e-36 157.1 399 34.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 4.2e-36 156.4 412 34.2
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.3e-36 155.2 381 33.6
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.2e-35 154.8 404 31.4
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.7e-35 153.7 364 35.4
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 4.6e-35 152.9 422 31.0
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 5.1e-34 149.4 420 34.5
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.5e-33 147.9 364 34.9
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 1.9e-33 147.5 382 34.0
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 2.5e-33 147.1 281 39.9
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.3e-33 145.6 367 35.1
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.1e-32 144.1 412 31.8
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 3.1e-31 140.2 418 32.8
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.2e-30 138.3 379 34.6
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.6e-30 135.6 417 32.9
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 9.9e-30 135.2 436 30.5
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.7e-29 134.4 422 32.5
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.8e-29 133.3 292 36.3
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 3.8e-29 133.3 414 33.3
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.4e-29 132.5 409 31.8
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.3e-28 128.6 309 37.5
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 1.6e-27 127.9 402 32.6
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 6.0e-27 125.9 298 33.6
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 7.9e-27 125.6 426 30.5
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.8e-26 124.4 290 34.1
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.8e-26 124.4 413 30.5
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 3.9e-26 123.2 376 30.6
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 3.9e-26 123.2 409 30.1
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.1e-26 122.9 326 33.1
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.9e-25 120.9 411 30.2
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.3e-25 120.2 416 28.8
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.3e-25 120.2 407 32.9
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 7.4e-25 119.0 403 31.0
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 9.6e-25 118.6 389 29.8
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 2.8e-24 117.1 433 31.2
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.2e-24 115.9 311 32.2
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.1e-23 115.2 376 30.6
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.8e-23 114.4 312 32.4
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 2.4e-23 114.0 319 30.7
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 2.4e-23 114.0 417 29.5
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 3.1e-23 113.6 407 31.2
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 9.0e-23 112.1 285 35.4
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 1.2e-22 111.7 189 37.0
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 1.5e-22 111.3 423 29.6
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 2.0e-22 110.9 348 29.6
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 2.0e-22 110.9 348 29.6
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 2.6e-22 110.5 419 30.1
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.6e-22 110.5 289 33.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.6e-22 110.5 379 31.4
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.4e-22 110.2 419 30.1
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 5.8e-22 109.4 285 34.0
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 5.8e-22 109.4 353 30.9
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 9.9e-22 108.6 352 29.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-21 108.2 285 33.7
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.7e-21 107.8 370 28.4
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 4.9e-21 106.3 400 31.2
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.4e-20 104.8 393 28.8
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 4.2e-20 103.2 335 31.3
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 7.1e-20 102.4 384 30.7
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.2e-19 101.7 387 30.0
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.6e-19 101.3 304 32.9
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.1e-19 100.9 306 29.7
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 2.7e-19 100.5 362 27.6
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.0e-18 98.6 403 29.0
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.3e-18 98.2 383 27.9
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.3e-18 98.2 364 27.7
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.0e-18 97.1 273 33.3
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 8.7e-18 95.5 415 27.0
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 8.7e-18 95.5 297 31.3
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.1e-17 95.1 370 28.6
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.1e-17 95.1 376 26.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.5e-17 94.7 399 27.8
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 2.5e-17 94.0 198 36.9
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 3.3e-17 93.6 323 31.0
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 4.3e-17 93.2 339 27.7
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 4.3e-17 93.2 299 29.1
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 4.3e-17 93.2 301 29.6
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 4.3e-17 93.2 123 47.2
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 7.4e-17 92.4 288 30.9
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 7.4e-17 92.4 308 30.5
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 1.3e-16 91.7 290 28.6
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.1e-16 90.9 275 32.7
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 2.1e-16 90.9 290 29.7
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.8e-16 90.5 401 25.7
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 3.7e-16 90.1 298 30.9
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.7e-16 90.1 294 29.9
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.7e-16 90.1 380 25.3
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 3.7e-16 90.1 417 26.4
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 3.7e-16 90.1 426 24.6
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 8.1e-16 89.0 432 27.5
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.1e-15 88.6 295 31.5
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.4e-15 88.2 353 26.3
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 3.1e-15 87.0 361 26.0
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 3.1e-15 87.0 425 27.1
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 5.3e-15 86.3 376 28.7
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 1.2e-14 85.1 257 33.9
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.2e-14 85.1 274 29.2
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.2e-14 85.1 285 29.8
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea HOM05D003726 ORTHO05D003520 2.6e-14 84.0 362 30.4
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 2.6e-14 84.0 166 33.7
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.6e-14 84.0 355 26.2
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 3.4e-14 83.6 289 29.4
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 4.5e-14 83.2 287 30.3
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.5e-14 83.2 344 30.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.8e-14 82.8 344 26.7
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 5.8e-14 82.8 397 26.4
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 5.8e-14 82.8 287 27.5
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 7.6e-14 82.4 123 39.0
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 7.6e-14 82.4 286 26.2
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 7.6e-14 82.4 308 29.5
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.0e-13 82.0 278 29.9
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 1.7e-13 81.3 334 30.2
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 2.2e-13 80.9 372 26.3
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 2.2e-13 80.9 295 29.2
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 2.9e-13 80.5 402 26.9
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 6.5e-13 79.3 364 27.5
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 8.4e-13 79.0 369 25.5
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 8.4e-13 79.0 369 25.5
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 1.1e-12 78.6 321 26.8
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 1.1e-12 78.6 275 32.7
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 1.9e-12 77.8 161 34.2
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.2e-12 77.0 364 27.2
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 3.2e-12 77.0 387 25.8
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.2e-12 77.0 206 33.5
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 3.2e-12 77.0 374 24.3
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 4.2e-12 76.6 395 26.8
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 5.5e-12 76.3 223 28.3
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 7.1e-12 75.9 188 35.1
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 7.1e-12 75.9 390 25.1
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 9.3e-12 75.5 153 33.3
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 2.1e-11 74.3 284 28.5
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 2.1e-11 74.3 285 29.8
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 2.7e-11 73.9 399 26.1
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.7e-11 73.9 312 27.2
BraA02t04692Z Brassica rapa HOM05D013727 ORTHO05D003520 3.5e-11 73.6 147 34.0
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 3.5e-11 73.6 288 30.6
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 3.5e-11 73.6 255 31.4
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 3.5e-11 73.6 217 29.0
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 3.5e-11 73.6 273 31.9
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 7.9e-11 72.4 176 31.2
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 7.9e-11 72.4 386 25.6
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 1.0e-10 72.0 213 29.1
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-10 72.0 231 29.9
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.3e-10 71.6 362 24.3
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 2.3e-10 70.9 315 27.6
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 3.9e-10 70.1 224 31.2
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 5.1e-10 69.7 320 25.3
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.1e-10 69.7 231 29.4
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 1.1e-09 68.6 129 36.4
Hund29902 Selenicereus undatus HOM05D046068 ORTHO05D003520 2.5e-09 67.4 221 30.8
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.3e-08 65.1 387 23.8
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 2.8e-08 63.9 346 26.6
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 4.8e-08 63.2 342 26.6
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 6.3e-08 62.8 308 26.0
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 1.4e-07 61.6 314 24.5
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 3.1e-07 60.5 365 24.1
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 2.0e-06 57.8 344 25.3
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.0e-06 57.8 273 25.6
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 3.4e-06 57.0 280 26.8
Gohir.A04G091850 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.0e-05 55.5 229 31.0


User provided reference genes

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