Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 0.0e+00 2172.5 1112 100.0
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1913.3 1140 87.5
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1590.1 1145 73.4
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1082.8 1164 52.1
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1081.6 1150 52.2
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1078.9 1122 53.7
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1078.2 1153 52.6
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 2.0e-310 1069.3 1144 51.4
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.3e-309 1063.9 1151 52.6
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.7e-307 1058.9 1153 52.1
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 3.0e-306 1055.4 1151 52.4
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 1.9e-305 1052.7 1135 52.5
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 3.3e-305 1052.0 1152 50.8
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-304 1049.7 1154 51.8
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 1.1e-303 1047.0 1135 52.0
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 1.2e-302 1043.5 1143 51.6
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 1.5e-302 1043.1 1105 52.6
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 5.4e-300 1034.6 1152 50.3
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 2.7e-299 1032.3 1150 50.4
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 4.6e-299 1031.6 1149 51.2
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 7.8e-299 1030.8 1150 50.2
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 1.1e-297 1026.9 1155 50.9
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 2.7e-291 1005.7 1149 49.6
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 6.6e-290 1001.1 1149 49.5
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 5.6e-289 998.0 1148 49.2
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 3.6e-288 995.3 1148 49.1
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 8.1e-288 994.2 1146 50.3
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 1.7e-285 986.5 1127 49.9
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 2.9e-285 985.7 1131 49.7
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 1.1e-284 983.8 1148 48.4
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 7.1e-284 981.1 1141 48.3
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 1.3e-280 970.3 1138 48.6
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 9.9e-278 960.7 1127 48.6
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 6.4e-277 958.0 1156 48.5
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 8.4e-277 957.6 1137 48.4
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 2.4e-276 956.1 1142 48.3
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 4.2e-276 955.3 1156 48.4
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 1.2e-270 937.2 1152 44.8
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.0e-270 936.4 694 71.9
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 7.6e-270 934.5 1138 47.5
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 1.1e-268 930.6 1135 48.3
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 6.7e-266 921.4 1152 44.6
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 8.7e-266 921.0 1151 45.9
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 8.1e-264 914.4 1081 47.9
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 1.2e-259 900.6 1126 45.1
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 1.2e-259 900.6 1143 45.2
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 2.3e-258 896.3 1145 45.2
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 8.7e-258 894.4 1172 45.1
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 1.3e-256 890.6 1149 47.2
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 4.8e-256 888.6 1062 48.7
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 8.2e-256 887.9 1149 44.4
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 4.0e-255 885.6 943 51.5
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 2.6e-254 882.9 1142 44.4
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 2.2e-253 879.8 1147 44.4
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 5.0e-253 878.6 1135 44.5
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 2.7e-251 872.8 1138 44.6
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 2.7e-251 872.8 1168 42.6
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 7.9e-251 871.3 1171 43.6
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 1.3e-250 870.5 1170 43.6
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.1e-244 850.9 894 52.6
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 4.6e-243 845.5 1102 44.7
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.5e-241 839.7 1155 43.7
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 5.0e-237 825.5 976 50.1
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 8.8e-234 814.7 1136 42.4
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 2.6e-233 813.1 808 53.5
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 3.8e-229 799.3 1114 43.1
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 5.0e-229 798.9 1093 44.3
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 8.2e-224 781.6 859 51.8
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.1e-223 778.1 1145 42.3
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.9e-221 773.1 979 47.1
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.9e-220 770.4 1019 44.1
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.8e-218 763.8 1149 40.1
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 6.5e-213 745.3 1145 40.1
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 4.2e-212 742.7 1135 39.6
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.6e-211 740.7 1095 39.4
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 1.8e-210 737.3 956 44.9
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.2e-209 734.6 1183 40.3
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.4e-207 727.6 1138 39.6
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.2e-206 724.5 987 45.3
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 5.9e-198 695.7 1107 39.1
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 2.5e-196 690.3 1025 41.2
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 4.7e-179 632.9 456 75.0
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 3.1e-178 630.2 801 44.1
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 4.0e-170 603.2 756 47.2
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.4e-162 578.2 626 51.6
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 6.0e-158 562.8 826 42.3
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.6e-145 520.8 972 37.3
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.6e-134 485.0 782 39.4
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.6e-131 474.9 1126 30.6
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 2.0e-124 451.4 1191 29.3
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 1.3e-120 438.7 1379 26.6
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.5e-92 343.2 506 43.9
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.1e-82 310.8 372 51.3
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.2e-78 299.3 361 46.8
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.6e-78 298.9 370 45.9
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.8e-76 290.4 602 34.1
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 9.5e-71 273.1 331 47.4
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.7e-67 262.3 1188 27.0
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.1e-66 259.6 344 45.9
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 2.1e-65 255.4 298 47.7
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.1e-55 223.0 389 37.8
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 1.5e-55 222.6 235 55.7
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 2.2e-51 208.8 298 42.6
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 6.4e-51 207.2 307 41.4
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 1.4e-50 206.1 192 53.1
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 9.3e-50 203.4 288 42.4
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.2e-44 186.4 155 60.6
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.6e-44 185.3 276 42.4
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.1e-39 169.9 173 47.4
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.8e-38 165.2 169 49.1
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 2.0e-36 159.1 235 40.9
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 4.6e-33 147.9 138 55.1
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.3e-32 146.4 483 26.9
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 7.6e-28 130.6 263 32.7
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-27 129.8 318 31.1
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 1.8e-21 109.4 318 30.8
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.2e-20 106.7 122 52.5
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 3.4e-20 105.1 132 50.0
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 4.5e-20 104.8 122 51.6
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.5e-20 104.8 122 51.6
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.2e-17 96.7 468 22.9
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 3.7e-14 85.1 137 32.8
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.1e-13 83.6 136 39.7
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 1.8e-13 82.8 367 24.0
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.3e-13 81.3 88 51.1
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.5e-10 71.2 85 41.2
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 6.7e-08 64.3 94 44.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 1.5e-07 63.2 67 44.8
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 2.6e-07 62.4 46 67.4


User provided reference genes

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