Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.4e-286 987.6 500 100.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 5.3e-271 937.2 500 94.4
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 5.3e-263 910.6 500 91.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.1e-231 806.6 475 85.9
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.4e-191 673.3 505 69.5
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 8.6e-189 664.1 479 71.4
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.1e-187 659.4 495 69.9
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-184 650.2 500 69.0
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.7e-184 649.8 491 69.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.9e-184 648.3 472 69.7
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.1e-182 642.9 479 68.5
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 7.8e-182 641.0 495 67.1
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-181 639.8 445 72.1
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.7e-181 639.8 497 67.6
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 2.3e-181 639.4 471 70.1
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.6e-181 637.9 445 72.1
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.2e-179 633.6 511 65.8
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 8.1e-179 630.9 468 69.9
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.1e-178 630.6 500 64.6
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.1e-178 630.6 503 65.8
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 3.1e-178 629.0 519 65.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 8.9e-178 627.5 503 65.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.6e-177 625.9 501 65.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 7.6e-177 624.4 508 63.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.3e-176 623.6 501 65.9
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.9e-176 622.5 496 64.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 6.4e-176 621.3 480 66.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 8.4e-176 620.9 522 63.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 8.4e-176 620.9 497 66.0
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.4e-175 620.2 479 66.0
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.4e-175 619.4 515 64.5
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 7.1e-175 617.8 486 66.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.1e-174 616.3 515 64.3
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.1e-174 616.3 471 66.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.7e-174 615.9 500 63.6
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 2.7e-174 615.9 508 63.2
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.7e-174 615.9 508 64.2
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.5e-174 615.5 473 67.4
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 3.5e-174 615.5 497 64.6
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.6e-174 615.1 473 67.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 6.0e-174 614.8 502 64.1
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 6.0e-174 614.8 496 65.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.8e-174 614.4 453 68.2
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 7.8e-174 614.4 470 67.4
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.7e-173 613.2 474 66.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.7e-173 613.2 474 66.0
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-172 609.4 473 65.5
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 7.3e-172 607.8 482 65.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 7.3e-172 607.8 474 66.5
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-171 607.1 473 65.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-171 606.7 473 65.3
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.8e-171 605.9 474 65.0
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 3.6e-171 605.5 474 65.4
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 3.6e-171 605.5 474 65.4
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.6e-171 605.5 490 63.7
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-170 604.0 502 62.7
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.4e-170 603.6 477 64.8
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.8e-170 603.2 474 64.3
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.1e-170 602.4 500 63.4
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.1e-170 602.4 474 64.1
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.1e-170 602.4 474 64.1
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.1e-170 602.4 472 66.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.0e-170 602.1 474 64.6
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 9.0e-170 600.9 475 66.1
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.2e-169 600.5 475 66.1
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.0e-169 599.7 494 63.0
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 2.0e-169 599.7 501 61.7
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.4e-169 598.6 495 62.8
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 7.6e-169 597.8 499 63.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.4e-167 593.6 469 65.2
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.4e-167 592.8 468 66.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 4.2e-167 592.0 462 66.0
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 9.3e-167 590.9 504 61.9
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.7e-166 589.3 495 61.4
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.5e-166 589.0 490 62.2
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.7e-165 586.6 504 60.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 3.9e-165 585.5 494 62.6
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.6e-163 578.9 474 63.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.6e-163 578.9 468 63.5
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-162 575.9 426 68.1
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.2e-161 573.9 475 62.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-161 573.5 470 64.7
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 7.6e-161 571.2 473 63.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 5.4e-159 565.1 501 59.7
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.3e-157 559.7 462 62.3
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.0e-157 559.3 474 62.9
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.8e-154 550.1 498 58.4
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.7e-152 543.5 507 57.4
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 2.9e-152 542.7 544 55.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 7.4e-148 528.1 560 54.1
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.4e-146 523.9 475 58.7
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-145 519.6 497 56.7
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 5.8e-145 518.5 398 65.6
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 6.5e-144 515.0 398 65.6
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 6.7e-141 505.0 443 58.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 4.3e-140 502.3 484 56.8
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 4.3e-140 502.3 379 67.0
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.9e-135 486.9 396 64.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-133 479.6 470 57.9
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.3e-130 468.8 406 59.9
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.7e-123 447.2 492 53.3
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 7.0e-122 441.8 356 64.3
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 4.2e-119 432.6 442 52.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.3e-117 426.8 443 52.1
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.9e-103 380.6 268 70.5
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.5e-95 351.7 229 75.5
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.3e-88 330.5 249 65.9
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.3e-88 330.5 249 65.9
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.9e-87 327.4 296 62.8
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.6e-86 323.2 269 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 4.1e-82 309.7 351 49.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 6.0e-81 305.8 220 68.6
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 6.0e-81 305.8 200 73.5
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 5.8e-76 289.3 321 48.3
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 4.1e-74 283.1 302 49.7
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 8.6e-72 275.4 220 63.2
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.2e-70 269.2 217 65.4
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 8.1e-70 268.9 266 56.8
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 6.8e-69 265.8 220 63.2
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 7.8e-65 252.3 186 66.1
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.0e-64 251.9 201 63.2
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.6e-64 248.8 226 60.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 4.7e-62 243.0 179 69.3
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.2e-61 239.6 250 52.0
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.9e-51 207.2 159 65.4
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.8e-51 206.8 164 62.8
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 6.4e-51 206.1 171 60.2
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.0e-40 170.6 421 28.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.5e-36 156.8 145 57.9
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-32 145.6 229 43.2
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 8.7e-32 142.5 490 29.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.8e-30 137.5 142 49.3
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.4e-28 130.6 108 63.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.0e-27 126.7 143 46.9
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-22 112.1 280 32.5
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.2e-19 101.3 55 87.3
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.8e-19 100.5 101 49.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.4e-15 86.3 61 72.1
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 4.8e-14 83.6 148 37.2
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.2e-11 74.7 156 35.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.2e-11 74.7 53 58.5
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.5e-11 72.8 67 58.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.6e-09 67.4 73 57.5
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.7e-07 59.3 92 40.2
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 6.3e-06 56.6 75 42.7


User provided reference genes

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