Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 4.3e-119 431.4 229 100.0
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 5.8e-116 421.0 229 96.5
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 4.9e-115 417.9 229 95.2
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.8e-110 402.1 230 91.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 1.1e-95 353.6 229 78.6
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 5.7e-95 351.3 229 78.2
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 3.7e-94 348.6 230 78.3
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 6.9e-93 344.4 236 79.2
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.5e-92 343.2 230 76.1
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 1.3e-91 340.1 229 75.5
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 75.7
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.2e-91 339.3 230 77.4
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.2e-91 339.3 230 75.7
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 74.3
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 76.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 5.0e-91 338.2 230 75.7
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 75.7
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.1e-90 337.0 230 76.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.1e-90 337.0 230 75.2
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.1e-90 337.0 220 81.8
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.5e-90 335.9 230 75.7
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 3.2e-90 335.5 230 74.8
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 4.2e-90 335.1 230 74.3
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 5.5e-90 334.7 230 73.9
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 76.1
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 74.8
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.2e-89 333.6 230 75.2
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.6e-89 333.2 230 75.2
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.7e-89 332.4 230 74.3
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 3.6e-89 332.0 230 73.5
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 4.6e-89 331.6 230 74.3
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 7.9e-89 330.9 228 74.6
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 73.0
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 3.0e-88 328.9 229 74.2
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 3.0e-88 328.9 230 72.6
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 3.9e-88 328.6 230 73.5
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 6.7e-88 327.8 230 74.3
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.5e-87 326.6 230 72.6
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.3e-87 325.5 230 72.6
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 4.3e-87 325.1 230 71.3
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.7e-87 324.7 230 72.6
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 72.6
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 72.2
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 70.9
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 6.3e-86 321.2 230 70.9
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 71.3
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.8e-85 319.7 229 72.1
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.1e-85 318.9 230 71.7
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 4.1e-85 318.5 238 68.5
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 6.9e-85 317.8 249 67.9
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 70.9
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 70.9
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.5e-84 316.6 252 66.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.5e-84 315.1 230 70.4
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 5.9e-84 314.7 232 70.3
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 5.9e-84 314.7 232 70.3
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 5.9e-84 314.7 230 69.6
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 7.7e-84 314.3 230 75.2
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.0e-83 313.9 229 71.2
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.0e-83 313.9 263 64.6
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.3e-83 313.5 230 70.4
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.2e-83 312.8 230 71.3
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 71.3
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 5.0e-83 311.6 230 70.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 6.5e-83 311.2 230 68.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 6.5e-83 311.2 229 69.4
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 1.4e-82 310.1 220 71.4
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.5e-82 309.3 230 69.6
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 4.2e-82 308.5 232 71.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 68.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 69.6
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-80 303.5 232 69.0
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.8e-80 303.1 232 68.1
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 3.0e-80 302.4 229 65.9
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 3.9e-80 302.0 230 68.7
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 6.7e-80 301.2 229 65.5
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 67.4
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 8.8e-80 300.8 229 65.1
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 8.8e-80 300.8 229 65.9
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.1e-79 300.4 231 68.4
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.5e-79 300.1 229 65.5
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.0e-79 299.7 229 65.5
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 67.4
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 3.3e-79 298.9 233 67.0
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 4.4e-79 298.5 229 65.1
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 67.0
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 5.7e-79 298.1 229 65.1
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 9.7e-79 297.4 229 65.1
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.7e-78 296.6 230 67.4
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 2.2e-78 296.2 231 68.4
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 3.7e-78 295.4 220 70.0
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.8e-78 295.0 229 64.6
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.8e-78 295.0 229 64.6
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.1e-77 293.9 229 65.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.1e-77 293.9 254 63.4
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.8e-77 293.1 307 57.0
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 68.3
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.6e-76 289.3 229 64.2
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.6e-76 289.3 229 66.8
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 5.9e-76 288.1 230 64.8
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 2.2e-75 286.2 229 63.3
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 8.5e-75 284.3 229 62.4
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.4e-74 283.5 229 65.5
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 1.0e-72 277.3 229 61.1
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 6.7e-72 274.6 360 48.1
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.2e-67 259.6 214 62.6
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.5e-66 255.0 181 74.6
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.7e-65 252.7 318 49.7
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 8.8e-64 247.7 215 60.9
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.5e-60 235.3 179 69.8
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 7.7e-60 234.6 166 71.7
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.9e-59 232.6 230 53.0
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.5e-59 231.1 164 72.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 2.5e-58 229.6 164 72.0
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.3e-56 223.0 140 80.0
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.8e-56 221.5 164 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 2.6e-55 219.5 231 54.1
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 2.2e-54 216.5 229 51.5
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.7e-54 215.7 228 55.7
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 4.8e-54 215.3 141 75.2
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 3.5e-52 209.1 282 45.4
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.1e-50 204.1 149 69.8
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 9.8e-47 191.0 138 65.2
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.3e-46 188.3 233 45.9
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.9e-43 179.5 117 75.2
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 5.6e-42 175.3 111 75.7
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 1.2e-41 174.1 175 53.7
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 6.1e-41 171.8 241 46.1
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.8e-40 170.2 216 49.1
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.6e-39 166.4 139 64.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 9.8e-39 164.5 138 60.1
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.3e-38 164.1 245 42.9
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.1e-37 161.0 266 41.0
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.6e-35 151.8 118 65.3
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.2e-33 145.2 152 50.7
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 8.9e-32 141.4 291 35.4
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.2e-28 131.0 126 57.9
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 7.8e-28 128.3 92 65.2
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 2.8e-25 119.8 111 58.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.4e-21 106.7 72 70.8
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 7.8e-20 101.7 71 66.2
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.1e-18 97.8 102 55.9
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.5e-18 96.7 124 50.0
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.2e-17 94.4 67 71.6
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 2.1e-17 93.6 80 63.8
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.5e-15 87.4 58 72.4
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 3.4e-15 86.3 63 63.5
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 4.9e-14 82.4 68 58.8
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.1e-13 81.3 54 75.9
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 7.1e-13 78.6 125 41.6
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 9.3e-13 78.2 129 38.0
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.0e-11 74.7 83 53.0
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 4.3e-10 69.3 91 45.1
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.8e-09 66.6 38 76.3
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 6.2e-09 65.5 61 50.8
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 9.0e-08 61.6 41 68.3
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 7.6e-07 58.5 40 70.0
MD03G1213500 Malus domestica HOM05D004531 ORTHO05D246742 4.9e-06 55.8 35 74.3
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 8.4e-06 55.1 45 62.2


User provided reference genes

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