Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.8e-243 845.5 428 100.0
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.1e-183 646.0 426 77.7
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 8.0e-159 564.3 308 95.1
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 1.0e-129 467.6 438 55.3
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 8.0e-127 458.0 429 54.8
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.2e-125 454.1 429 57.6
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 8.3e-124 448.0 431 57.3
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 3.2e-123 446.0 413 56.4
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 4.6e-122 442.2 407 56.3
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 3.0e-121 439.5 415 56.6
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.4e-118 430.6 429 55.9
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.3e-118 429.9 418 56.2
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.7e-116 423.7 429 51.5
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-116 423.7 429 51.5
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.1e-114 416.8 450 50.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.8e-114 414.8 429 51.5
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-113 414.1 397 55.4
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 1.7e-113 413.7 441 51.2
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.3e-113 413.3 447 49.7
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.1e-112 411.0 437 51.5
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 1.9e-112 410.2 424 52.1
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 1.2e-111 407.5 427 51.3
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.6e-111 407.1 415 51.1
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.1e-111 406.8 420 50.0
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.8e-111 406.4 412 51.5
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 2.8e-111 406.4 415 50.6
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 8.1e-111 404.8 414 54.3
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 1.1e-110 404.4 411 54.3
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 1.4e-110 404.1 418 50.5
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 2.0e-109 400.2 437 51.5
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 2.1e-106 390.2 387 55.6
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.7e-106 389.8 438 51.4
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 3.5e-106 389.4 423 52.7
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 2.3e-105 386.7 427 50.8
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 8.6e-105 384.8 427 48.7
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 1.5e-104 384.0 442 52.5
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 3.3e-104 382.9 435 51.3
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.6e-103 380.6 449 46.8
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.1e-103 380.2 437 50.8
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.1e-102 377.9 430 51.4
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.4e-102 377.5 437 51.0
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 5.2e-102 375.6 404 49.8
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 2.0e-101 373.6 463 49.5
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 2.6e-101 373.2 421 48.9
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 3.4e-101 372.9 430 50.7
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 4.4e-101 372.5 410 49.8
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 4.4e-101 372.5 433 49.9
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 7.6e-101 371.7 434 51.6
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.7e-100 370.5 392 50.0
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.7e-100 370.5 435 46.7
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-100 369.4 432 47.0
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-100 369.4 429 47.6
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.4e-100 368.2 432 47.0
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-99 367.9 453 45.7
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.1e-99 367.9 400 52.8
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.4e-99 367.5 455 45.5
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 2.4e-99 366.7 401 48.6
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.2e-98 364.4 405 47.7
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 1.6e-98 364.0 406 48.5
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.3e-97 360.9 410 50.0
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 2.3e-97 360.1 412 46.8
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 2.3e-97 360.1 412 46.8
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 5.1e-97 359.0 410 46.6
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 5.1e-97 359.0 388 49.5
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.1e-96 357.8 433 49.2
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 1.5e-96 357.5 412 46.6
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 2.5e-96 356.7 410 46.3
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 5.6e-96 355.5 414 48.3
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 5.6e-96 355.5 396 52.0
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-95 353.6 413 47.0
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.4e-94 350.9 407 47.4
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.8e-94 350.5 413 48.7
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 9.0e-94 348.2 398 50.3
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 4.4e-93 345.9 447 46.3
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 5.8e-93 345.5 391 48.3
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 4.2e-91 339.3 408 46.8
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 7.1e-91 338.6 440 45.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 4.6e-90 335.9 388 49.7
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.3e-89 334.3 420 47.1
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 3.9e-89 332.8 440 45.0
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 5.1e-89 332.4 190 82.1
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 2.5e-88 330.1 457 42.7
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 2.5e-88 330.1 448 43.3
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.5e-88 330.1 442 45.5
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 5.3e-86 322.4 411 46.0
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 5.3e-86 322.4 418 45.7
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 6.9e-86 322.0 513 39.4
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.5e-85 320.9 438 42.9
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.5e-85 320.9 438 42.9
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 3.4e-85 319.7 361 50.1
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 3.4e-85 319.7 385 50.1
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 2.9e-84 316.6 377 46.7
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-83 314.7 419 45.1
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 7.1e-83 312.0 409 43.3
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 7.9e-82 308.5 391 47.6
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.0e-81 308.1 405 43.7
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 3.3e-80 303.1 437 43.5
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.1e-78 298.1 311 52.7
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.8e-78 297.4 308 52.6
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 4.6e-74 282.7 302 51.3
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 5.1e-73 279.3 302 51.3
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 9.6e-72 275.0 401 44.4
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.4e-69 266.5 410 41.2
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.7e-68 264.2 245 59.2
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 3.2e-67 260.0 379 40.6
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 1.0e-65 255.0 483 35.0
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.3e-64 249.6 258 53.1
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.5e-61 239.6 272 48.9
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 5.0e-60 236.1 298 46.3
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.7e-55 221.1 405 35.8
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 3.7e-55 219.9 239 48.1
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.8e-54 217.6 439 34.4
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 3.2e-51 206.8 458 33.6
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 2.7e-50 203.8 170 57.1
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.0e-49 201.8 558 30.5
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.1e-46 191.8 290 42.1
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-46 191.4 218 49.5
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.0e-45 187.6 428 32.7
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 7.7e-45 185.7 525 31.6
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 5.5e-43 179.5 229 44.1
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-41 174.5 166 52.4
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 3.0e-41 173.7 203 50.7
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.3e-39 168.3 298 38.3
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 4.5e-37 159.8 233 45.1
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 4.5e-37 159.8 233 45.1
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 8.0e-34 149.1 396 31.3
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 3.0e-33 147.1 168 54.8
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 2.0e-32 144.4 144 54.9
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 4.4e-32 143.3 185 45.9
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 8.3e-31 139.0 187 43.3
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 2.2e-28 131.0 363 30.6
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 7.2e-27 125.9 165 43.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 2.7e-26 124.0 113 64.6
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 3.0e-25 120.6 218 37.2
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 4.0e-25 120.2 185 37.3
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 4.4e-24 116.7 204 38.7
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.0e-21 107.8 128 42.2
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 5.0e-20 103.2 85 55.3
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 7.2e-19 99.4 134 41.0
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 1.2e-18 98.6 123 43.1
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 6.1e-18 96.3 165 31.5
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 2.3e-17 94.4 102 49.0
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 6.3e-15 86.3 175 30.9
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.4e-14 85.1 94 48.9
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.2e-14 84.0 66 65.2
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 2.8e-10 70.9 56 58.9
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 4.0e-09 67.0 52 59.6
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 5.2e-09 66.6 75 50.7
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 9.8e-08 62.4 99 36.4
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 7.0e-06 56.2 73 39.7
MD12G1248900 Malus domestica HOM05D004964 ORTHO05D005918 9.2e-06 55.8 59 52.5


User provided reference genes

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