Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 0.0e+00 1491.9 736 100.0
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 0.0e+00 1318.1 729 89.0
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 0.0e+00 1288.9 734 86.6
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 0.0e+00 1272.3 647 96.1
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 4.8e-289 997.7 750 66.7
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.8e-283 979.2 745 66.3
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 4.5e-279 964.5 748 64.2
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.3e-278 962.2 748 64.3
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.1e-277 959.9 745 65.4
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 1.9e-277 959.1 748 65.2
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.0e-275 953.4 748 63.6
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 1.2e-274 949.9 741 65.2
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 7.5e-274 947.2 741 65.0
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 9.8e-274 946.8 750 63.9
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.9e-273 945.3 749 64.0
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 6.3e-273 944.1 751 63.1
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 8.3e-273 943.7 744 64.5
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 2.4e-272 942.2 748 63.8
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.5e-271 938.3 748 63.1
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.1e-269 933.3 747 62.2
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.5e-269 932.9 747 62.1
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 1.1e-264 916.8 745 63.0
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 3.5e-263 911.8 750 61.9
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 5.0e-262 907.9 748 62.8
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 7.3e-261 904.0 746 62.5
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 4.7e-260 901.4 747 62.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 4.0e-259 898.3 771 59.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.5e-258 896.3 748 61.4
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.4e-258 894.8 780 60.8
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 7.5e-258 894.0 748 61.5
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.3e-257 893.3 750 61.6
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 4.9e-257 891.3 736 60.5
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 8.3e-257 890.6 752 61.7
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.1e-256 890.2 776 60.6
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 7.1e-256 887.5 749 61.9
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.2e-255 886.7 779 60.3
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 2.1e-255 885.9 748 61.2
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 2.7e-255 885.6 747 60.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 2.3e-254 882.5 740 60.4
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 6.6e-254 880.9 738 60.6
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 8.6e-254 880.6 668 65.9
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 1.9e-253 879.4 734 59.9
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 7.3e-253 877.5 734 59.7
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 1.2e-252 876.7 738 59.9
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.6e-252 876.3 736 59.8
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 6.2e-252 874.4 736 60.3
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 6.2e-252 874.4 731 61.1
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.8e-251 872.8 749 59.4
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 5.2e-251 871.3 740 59.9
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 2.0e-250 869.4 736 59.6
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 2.0e-250 869.4 744 59.3
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 3.4e-250 868.6 737 60.0
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 1.3e-249 866.7 779 59.2
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 2.2e-249 865.9 735 59.3
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 4.9e-249 864.8 737 60.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 8.4e-249 864.0 739 59.4
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 8.4e-249 864.0 747 60.0
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.9e-248 862.8 753 59.5
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 2.4e-248 862.4 738 59.1
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.2e-247 860.1 747 59.8
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 1.6e-247 859.8 684 63.3
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.1e-247 859.4 754 59.7
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.3e-246 856.7 754 59.4
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 6.6e-246 854.4 739 58.9
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 6.6e-246 854.4 739 58.9
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 1.5e-245 853.2 758 58.3
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.5e-245 853.2 737 59.2
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.5e-245 852.4 664 64.9
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.1e-244 849.4 805 55.5
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 2.8e-244 849.0 754 58.4
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 3.6e-244 848.6 755 58.7
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 4.7e-244 848.2 832 54.3
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 6.2e-244 847.8 745 58.4
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 8.1e-244 847.4 746 58.2
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 8.1e-244 847.4 774 57.9
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 8.9e-243 844.0 774 57.6
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.5e-242 843.2 611 69.6
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 6.4e-241 837.8 671 63.2
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.7e-239 832.4 776 56.6
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 6.6e-238 827.8 747 56.9
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 9.6e-237 823.9 732 58.5
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 5.3e-235 818.1 680 62.2
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 3.8e-233 812.0 747 57.3
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.4e-233 811.2 762 57.0
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.1e-229 800.4 817 53.0
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 5.8e-226 788.1 755 55.6
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.4e-224 783.5 734 55.2
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.2e-224 782.3 757 55.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 4.2e-224 781.9 768 54.8
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.5e-224 781.6 670 58.4
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 5.1e-222 775.0 673 59.4
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.9e-221 773.1 754 54.2
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 6.2e-220 768.1 731 55.5
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 8.1e-220 767.7 671 59.5
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.0e-214 750.7 764 53.1
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 7.6e-210 734.6 751 52.6
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 5.0e-209 731.9 572 67.0
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.8e-206 723.4 816 49.8
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.7e-201 706.8 741 52.1
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.2e-201 706.4 747 52.2
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 7.9e-199 698.0 752 51.3
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.1e-195 686.0 740 50.3
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 4.2e-192 675.6 624 57.5
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.6e-183 647.1 927 42.9
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 2.8e-180 636.3 754 47.6
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 6.1e-175 618.6 632 53.0
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-170 603.6 740 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 7.7e-170 601.7 789 45.8
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 8.0e-167 591.7 592 52.7
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 1.3e-164 584.3 551 54.3
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.3e-161 574.3 636 50.2
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 8.0e-159 565.1 602 50.8
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 4.9e-156 555.8 619 50.1
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.7e-151 539.3 527 53.9
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.2e-149 534.6 657 48.1
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 1.4e-147 527.7 561 52.9
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.3e-124 451.4 406 56.7
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 8.1e-103 379.0 400 52.2
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.2e-87 327.8 622 35.5
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.4e-85 320.5 366 51.1
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 1.1e-78 298.9 695 31.9
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 5.9e-77 293.1 522 36.4
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.2e-59 233.8 371 39.1
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 4.2e-51 207.2 188 62.2
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.7e-50 203.8 240 45.0
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.7e-50 203.8 240 45.0
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 8.3e-47 193.0 577 29.5
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.1e-46 191.0 147 64.6
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 6.8e-41 173.3 183 47.5
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 3.0e-36 157.9 102 76.5
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 8.6e-36 156.4 164 52.4
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 6.2e-34 150.2 77 92.2
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.6e-32 144.8 77 87.0
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 9.8e-32 142.9 77 85.7
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 4.6e-21 107.5 56 91.1
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 1.4e-17 95.9 104 44.2
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-16 92.4 57 77.2
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 1.3e-15 89.4 212 34.4
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 2.9e-15 88.2 62 62.9
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 9.2e-14 83.2 77 51.9
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.0e-12 79.7 50 70.0
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.3e-12 79.3 87 51.7
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.0e-08 65.5 56 57.1
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 5.8e-08 63.9 66 43.9
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.7e-07 62.4 66 43.9


User provided reference genes

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