Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008663.2 Cucumis melo HOM05D003512 ORTHO05D004013 1.4e-32 143.3 134 100.0
ClCG11G010230 Citrullus lanatus HOM05D003512 ORTHO05D004013 3.9e-19 98.6 112 97.3
CsaV3_2G010090 Cucumis sativus L. HOM05D003512 ORTHO05D004013 1.9e-18 96.3 112 94.6
Sed0015250 Sechium edule HOM05D003512 ORTHO05D004013 1.2e-15 87.0 110 49.1
Lsat_1_v5_gn_8_90440 Lactuca sativa HOM05D003512 ORTHO05D004013 1.2e-12 77.0 40 90.0
PGR142G3520 Punica granatum HOM05D003512 ORTHO05D004013 1.0e-11 73.9 41 87.8
HanXRQChr10g0287201 Helianthus annuus HOM05D003512 ORTHO05D004013 1.3e-11 73.6 40 85.0
HanXRQChr13g0408961 Helianthus annuus HOM05D003512 ORTHO05D004013 1.3e-11 73.6 40 85.0
CANSAT01G3044 Cannabis sativa HOM05D003512 ORTHO05D004013 2.3e-11 72.8 39 82.1
HanXRQChr15g0468101 Helianthus annuus HOM05D003512 ORTHO05D004013 2.3e-11 72.8 40 85.0
Thecc.01G245400 Theobroma cacao HOM05D003512 ORTHO05D004013 2.3e-11 72.8 39 84.6
CARHR110760 Cardamine hirsuta HOM05D003512 ORTHO05D004013 3.0e-11 72.4 41 82.9
THA.LOC104814542 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.0e-11 72.4 37 89.2
Aa31LG8G17250 Aethionema arabicum HOM05D003512 ORTHO05D004013 3.9e-11 72.0 40 85.0
THA.LOC104820062 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.9e-11 72.0 36 91.7
TPR.G20608 Trifolium pratense HOM05D003512 ORTHO05D004013 3.9e-11 72.0 37 89.2
Medtr1g069235 Medicago truncatula HOM05D003512 ORTHO05D004013 5.1e-11 71.6 40 82.5
Potri.002G253800 Populus trichocarpa HOM05D003512 ORTHO05D004013 5.1e-11 71.6 40 82.5
Duzib133G0561 Durio zibethinus HOM05D003512 ORTHO05D004013 6.6e-11 71.2 40 80.0
ECA247G0853 Erigeron canadensis HOM05D003512 ORTHO05D004013 6.6e-11 71.2 40 82.5
TWI32G0368 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 6.6e-11 71.2 40 85.0
TWI34G1801 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 6.6e-11 71.2 40 85.0
Haze_24736 Corylus avellana HOM05D003512 ORTHO05D004013 8.6e-11 70.9 39 82.1
ECA236G1700 Erigeron canadensis HOM05D003512 ORTHO05D004013 8.6e-11 70.9 39 82.1
Gohir.A07G202600 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.6e-11 70.9 39 82.1
Gohir.D07G208800 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.6e-11 70.9 39 82.1
Gohir.A08G046200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 1.1e-10 70.5 39 82.1
arahy.Tifrunner.gnm1.ann1.QW0L8Q Arachis hypogaea HOM05D003512 ORTHO05D004013 1.5e-10 70.1 37 83.8
arahy.Tifrunner.gnm1.ann1.TN6DUA Arachis hypogaea HOM05D003512 ORTHO05D004013 1.5e-10 70.1 37 83.8
Ciclev10022750m.g Citrus clementina HOM05D003512 ORTHO05D004013 1.5e-10 70.1 37 83.8
MD05G1183900 Malus domestica HOM05D003512 ORTHO05D004013 1.5e-10 70.1 37 83.8
Manes.12G040000 Manihot esculenta HOM05D003512 ORTHO05D004013 1.5e-10 70.1 39 79.5
QL09p043416 Quercus lobata HOM05D003512 ORTHO05D004013 1.5e-10 70.1 39 79.5
CiPaw.03G273300 Carya illinoinensis HOM05D003512 ORTHO05D004013 1.9e-10 69.7 37 83.8
Ca_09628_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 1.9e-10 69.7 36 88.9
Gohir.A11G135000 Gossypium hirsutum HOM05D003512 ORTHO05D004013 1.9e-10 69.7 39 79.5
Gohir.D11G141200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 1.9e-10 69.7 39 79.5
Gorai.007G151500 Gossypium raimondii HOM05D003512 ORTHO05D004013 1.9e-10 69.7 39 79.5
MD10G1171800 Malus domestica HOM05D003512 ORTHO05D004013 1.9e-10 69.7 40 77.5
Prupe.8G210000 Prunus persica HOM05D003512 ORTHO05D004013 1.9e-10 69.7 40 77.5
THA.LOC104804030 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.9e-10 69.7 37 86.5
Ca_08765_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 2.5e-10 69.3 37 81.1
Gohir.D08G056700 Gossypium hirsutum HOM05D003512 ORTHO05D004013 2.5e-10 69.3 39 79.5
Gorai.004G057800 Gossypium raimondii HOM05D003512 ORTHO05D004013 2.5e-10 69.3 39 79.5
BcaC07g38359 Brassica carinata HOM05D003512 ORTHO05D004013 3.3e-10 68.9 36 86.1
A08p19920 Brassica napus HOM05D003512 ORTHO05D004013 3.3e-10 68.9 36 86.1
C08p11070 Brassica napus HOM05D003512 ORTHO05D004013 3.3e-10 68.9 36 86.1
BolC8t48776H Brassica oleracea HOM05D003512 ORTHO05D004013 3.3e-10 68.9 36 86.1
BraA08t33949Z Brassica rapa HOM05D003512 ORTHO05D004013 3.3e-10 68.9 36 86.1
Carub.0003s3459 Capsella rubella HOM05D003512 ORTHO05D004013 3.3e-10 68.9 35 88.6
Duzib138G0098 Durio zibethinus HOM05D003512 ORTHO05D004013 3.3e-10 68.9 37 83.8
Duzib211G0535 Durio zibethinus HOM05D003512 ORTHO05D004013 3.3e-10 68.9 39 79.5
FvH4_2g19960 Fragaria vesca HOM05D003512 ORTHO05D004013 3.3e-10 68.9 40 77.5
FAN15G0220 Fragaria x ananassa HOM05D003512 ORTHO05D004013 3.3e-10 68.9 40 77.5
FAN27G0931 Fragaria x ananassa HOM05D003512 ORTHO05D004013 3.3e-10 68.9 40 77.5
Lalb_Chr02g0152921 Lupinus albus HOM05D003512 ORTHO05D004013 4.3e-10 68.6 36 83.3
Lalb_Chr25g0289731 Lupinus albus HOM05D003512 ORTHO05D004013 4.3e-10 68.6 37 81.1
AL7G23750 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 5.6e-10 68.2 36 83.3
A01p09160 Brassica napus HOM05D003512 ORTHO05D004013 5.6e-10 68.2 36 83.3
CARHR236540 Cardamine hirsuta HOM05D003512 ORTHO05D004013 5.6e-10 68.2 40 77.5
Thhalv10002106m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 5.6e-10 68.2 42 81.0
Rhsim13G0041600 Rhododendron simsii HOM05D003512 ORTHO05D004013 5.6e-10 68.2 44 77.3
Sp7g26760 Schrenkiella parvula HOM05D003512 ORTHO05D004013 5.6e-10 68.2 40 77.5
Sed0000934 Sechium edule HOM05D003512 ORTHO05D004013 5.6e-10 68.2 114 48.2
vmacro02722 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 5.6e-10 68.2 44 77.3
AT2G20260 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 7.3e-10 67.8 36 86.1
HanXRQChr11g0327281 Helianthus annuus HOM05D003512 ORTHO05D004013 7.3e-10 67.8 34 91.2
Sp3g33490 Schrenkiella parvula HOM05D003512 ORTHO05D004013 7.3e-10 67.8 40 80.0
Hund18341 Selenicereus undatus HOM05D003512 ORTHO05D004013 7.3e-10 67.8 34 91.2
TWI59G0010 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 7.3e-10 67.8 39 79.5
Cpa.g.sc8.213 Carica papaya HOM05D003512 ORTHO05D004013 9.6e-10 67.4 37 81.1
Lalb_Chr21g0314191 Lupinus albus HOM05D003512 ORTHO05D004013 9.6e-10 67.4 36 83.3
Ah.15g093440 Amaranthus hybridus HOM05D003512 ORTHO05D004013 1.6e-09 66.6 36 83.3
Dinv19249 Davidia involucrata HOM05D003512 ORTHO05D004013 1.6e-09 66.6 37 83.8
Lsat_1_v5_gn_2_15600 Lactuca sativa HOM05D003512 ORTHO05D004013 1.6e-09 66.6 34 88.2
RcHm_v2.0_Chr6g0285621 Rosa chinensis HOM05D003512 ORTHO05D004013 1.6e-09 66.6 40 75.0
Aa31LG2G21620 Aethionema arabicum HOM05D003512 ORTHO05D004013 2.1e-09 66.2 40 77.5
BraA01t00862Z Brassica rapa HOM05D003512 ORTHO05D004013 2.1e-09 66.2 35 82.9
Medtr7g099390 Medicago truncatula HOM05D003512 ORTHO05D004013 2.1e-09 66.2 37 78.4
Oeu047197.1 Olea europaea HOM05D003512 ORTHO05D004013 2.1e-09 66.2 40 77.5
DCAR_012618 Daucus carota HOM05D003512 ORTHO05D004013 2.8e-09 65.9 36 83.3
Thecc.05G265600 Theobroma cacao HOM05D003512 ORTHO05D004013 2.8e-09 65.9 34 88.2
Eucgr.B02162 Eucalyptus grandis HOM05D003512 ORTHO05D004013 3.6e-09 65.5 41 78.0
Hund21755 Selenicereus undatus HOM05D003512 ORTHO05D004013 3.6e-09 65.5 49 67.3
CAN.G771.48 Capsicum annuum HOM05D003512 ORTHO05D004013 4.7e-09 65.1 39 79.5
Os07g0435300 Oryza sativa ssp. japonica HOM05D003512 ORTHO05D004013 4.7e-09 65.1 39 76.9
MSTRG.21447 Avicennia marina HOM05D003512 ORTHO05D004013 6.2e-09 64.7 41 75.6
Zm00001eb096870 Zea mays HOM05D003512 ORTHO05D004013 6.2e-09 64.7 41 75.6
Zm00001eb306070 Zea mays HOM05D003512 ORTHO05D004013 6.2e-09 64.7 41 75.6
Ah.08g213830 Amaranthus hybridus HOM05D003512 ORTHO05D004013 8.1e-09 64.3 34 82.4
Eucgr.H00828 Eucalyptus grandis HOM05D003512 ORTHO05D004013 8.1e-09 64.3 36 80.6
Hma1.2p1_0123F.1_g058160 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 8.1e-09 64.3 34 85.3
Oeu026192.1 Olea europaea HOM05D003512 ORTHO05D004013 8.1e-09 64.3 34 85.3
Peaxi162Scf00043g00067 Petunia axillaris HOM05D003512 ORTHO05D004013 8.1e-09 64.3 46 71.7
Sopen09g025300 Solanum pennellii HOM05D003512 ORTHO05D004013 8.1e-09 64.3 46 71.7
unitig_22.g6316 Utricularia gibba HOM05D003512 ORTHO05D004013 8.1e-09 64.3 34 82.4
Carub.0007s1189 Capsella rubella HOM05D003512 ORTHO05D004013 1.1e-08 63.9 34 82.4
Nitab4.5_0004333g0020 Nicotiana tabacum HOM05D003512 ORTHO05D004013 1.1e-08 63.9 46 69.6
CDE02G1659 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.4e-08 63.5 35 80.0
CDE09G0441 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.4e-08 63.5 35 80.0
AUR62025395 Chenopodium quinoa HOM05D003512 ORTHO05D004013 1.8e-08 63.2 42 73.8
Dinv43039 Davidia involucrata HOM05D003512 ORTHO05D004013 1.8e-08 63.2 31 93.5
Peaxi162Scf00517g00118 Petunia axillaris HOM05D003512 ORTHO05D004013 1.8e-08 63.2 40 72.5
Actinidia30108 Actinidia chinensis HOM05D003512 ORTHO05D004013 2.4e-08 62.8 31 93.5
PSO764G0144 Papaver somniferum HOM05D003512 ORTHO05D004013 2.4e-08 62.8 40 72.5
PSO832G4467 Papaver somniferum HOM05D003512 ORTHO05D004013 2.4e-08 62.8 40 72.5
Solyc09g063130.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 2.4e-08 62.8 46 69.6
PGSC0003DMG400022022 Solanum tuberosum HOM05D003512 ORTHO05D004013 2.4e-08 62.8 46 69.6
TAR362G0114 Trochodendron aralioides HOM05D003512 ORTHO05D004013 2.4e-08 62.8 39 74.4
CBR_g17684 Chara braunii HOM05D003512 ORTHO05D004013 3.1e-08 62.4 37 75.7
Gorai.001G235800 Gossypium raimondii HOM05D003512 ORTHO05D004013 3.1e-08 62.4 39 74.4
Oeu017338.1 Olea europaea HOM05D003512 ORTHO05D004013 3.1e-08 62.4 33 84.8
Solyc06g083680.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 3.1e-08 62.4 39 71.8
Sopen06g035100 Solanum pennellii HOM05D003512 ORTHO05D004013 3.1e-08 62.4 39 71.8
PGSC0003DMG400020154 Solanum tuberosum HOM05D003512 ORTHO05D004013 3.1e-08 62.4 39 71.8
TWI23G0432 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 3.1e-08 62.4 39 74.4
Lsat_1_v5_gn_9_12001 Lactuca sativa HOM05D003512 ORTHO05D004013 4.0e-08 62.0 31 90.3
Lalb_Chr06g0170911 Lupinus albus HOM05D003512 ORTHO05D004013 4.0e-08 62.0 35 77.1
SEGI_17443 Sequoiadendron giganteum HOM05D003512 ORTHO05D004013 4.0e-08 62.0 40 70.0
vmacro19972 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 4.0e-08 62.0 33 81.8
Atru.chr5.1920 Acer truncatum HOM05D003512 ORTHO05D004013 6.8e-08 61.2 32 84.4
Glyma.10G042000 Glycine max HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
Glyma.10G042100 Glycine max HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
Glyma.13G129400 Glycine max HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
Glyma.13G129500 Glycine max HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
Phvul.007G155500 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
Phvul.008G133700 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
VMungo0720G2276 Vigna mungo HOM05D003512 ORTHO05D004013 6.8e-08 61.2 31 90.3
Aqoxy5G00078 Aquilegia oxysepala HOM05D003512 ORTHO05D004013 8.9e-08 60.8 34 79.4
Nitab4.5_0004777g0040 Nicotiana tabacum HOM05D003512 ORTHO05D004013 8.9e-08 60.8 34 79.4
COL.COLO4_07003 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.2e-07 60.5 34 79.4
Lj5g0026666 Lotus japonicus HOM05D003512 ORTHO05D004013 1.5e-07 60.1 31 87.1
Oeu039643.2 Olea europaea HOM05D003512 ORTHO05D004013 1.5e-07 60.1 31 87.1
AT4G28750 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 2.0e-07 59.7 31 83.9
BcaC06g32605 Brassica carinata HOM05D003512 ORTHO05D004013 2.0e-07 59.7 31 83.9
BcaNung01368 Brassica carinata HOM05D003512 ORTHO05D004013 2.0e-07 59.7 31 83.9
BcaNung07172 Brassica carinata HOM05D003512 ORTHO05D004013 2.0e-07 59.7 31 83.9
C01p10750 Brassica napus HOM05D003512 ORTHO05D004013 2.0e-07 59.7 31 83.9
BolC1t01034H Brassica oleracea HOM05D003512 ORTHO05D004013 2.0e-07 59.7 31 83.9
arahy.Tifrunner.gnm1.ann1.110G34 Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-07 59.3 31 87.1
arahy.Tifrunner.gnm1.ann1.DHZ2RQ Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-07 59.3 31 87.1
arahy.Tifrunner.gnm1.ann1.HB1P9N Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-07 59.3 31 87.1
arahy.Tifrunner.gnm1.ann1.PI6GK2 Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-07 59.3 31 87.1
BcaB03g12587 Brassica carinata HOM05D003512 ORTHO05D004013 3.4e-07 58.9 31 83.9
Sabra02G0192900 Salix brachista HOM05D003512 ORTHO05D004013 3.4e-07 58.9 59 54.2
HPP92_027295 Vanilla planifolia HOM05D003512 ORTHO05D004013 3.4e-07 58.9 30 90.0
AagrBONN_evm.TU.Sc2ySwM_344.4760 Anthoceros agrestis HOM05D003512 ORTHO05D004013 4.4e-07 58.5 42 66.7
CSS0050291 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 5.8e-07 58.2 31 80.6
ATR0787G081 Amborella trichopoda HOM05D003512 ORTHO05D004013 7.6e-07 57.8 39 69.2
Migut.D00498 Erythranthe guttata HOM05D003512 ORTHO05D004013 7.6e-07 57.8 31 80.6
MCO05G318 Micromonas commoda HOM05D003512 ORTHO05D004013 7.6e-07 57.8 44 63.6
TAR365G0283 Trochodendron aralioides HOM05D003512 ORTHO05D004013 7.6e-07 57.8 31 80.6
unitig_85.g27272 Utricularia gibba HOM05D003512 ORTHO05D004013 1.3e-06 57.0 34 70.6
GSVIVG01028481001 Vitis vinifera HOM05D003512 ORTHO05D004013 1.7e-06 56.6 30 83.3
Manes.13G042400 Manihot esculenta HOM05D003512 ORTHO05D004013 2.2e-06 56.2 31 77.4
Rhsim05G0169700 Rhododendron simsii HOM05D003512 ORTHO05D004013 2.2e-06 56.2 30 83.3
SalBow6G4606 Salvia bowleyana HOM05D003512 ORTHO05D004013 2.2e-06 56.2 31 77.4
SMO201G0191 Selaginella moellendorffii HOM05D003512 ORTHO05D004013 2.9e-06 55.8 34 70.6
unitig_699.g19325 Utricularia gibba HOM05D003512 ORTHO05D004013 2.9e-06 55.8 37 67.6
CiPaw.04G192200 Carya illinoinensis HOM05D003512 ORTHO05D004013 4.9e-06 55.1 29 82.8
DCAR_018535 Daucus carota HOM05D003512 ORTHO05D004013 4.9e-06 55.1 31 80.6
COL.COLO4_36321 Corchorus olitorius HOM05D003512 ORTHO05D004013 8.4e-06 54.3 30 80.0


User provided reference genes

Program Settings