Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 8.1e-238 826.6 403 100.0
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 7.9e-225 783.5 401 95.3
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.8e-214 748.4 401 90.5
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.6e-180 635.6 394 80.2
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 6.5e-163 577.8 410 69.5
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 6.5e-163 577.8 367 74.7
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.6e-161 573.2 391 70.6
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.5e-159 566.6 397 69.0
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 2.6e-159 565.8 357 75.1
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 3.4e-159 565.5 359 74.4
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.3e-158 563.5 393 69.2
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.2e-156 557.0 368 72.3
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 8.6e-155 550.8 392 68.1
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.3e-154 548.5 392 67.9
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 4.3e-154 548.5 393 69.0
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.1e-153 546.2 402 66.2
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 8.0e-153 544.3 402 66.7
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.0e-152 543.9 376 68.6
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.3e-152 542.7 407 67.3
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 3.0e-152 542.3 358 72.1
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.0e-152 542.3 401 65.3
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 8.9e-152 540.8 366 70.2
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.2e-151 540.4 402 66.2
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.0e-151 539.7 399 67.4
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 5.7e-151 538.1 357 71.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.1e-149 533.9 357 70.6
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.1e-149 533.9 357 70.6
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.4e-149 532.7 366 69.1
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 3.2e-149 532.3 399 65.4
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 4.1e-149 531.9 403 64.8
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 4.6e-148 528.5 363 70.2
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 4.6e-148 528.5 359 68.5
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.9e-148 528.1 368 69.3
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.9e-147 525.4 358 71.2
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 6.6e-147 524.6 359 69.4
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 8.6e-147 524.2 359 69.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.5e-146 522.7 352 71.0
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.5e-146 522.7 360 68.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 5.6e-146 521.5 364 68.4
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 7.3e-146 521.2 358 70.1
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.6e-145 520.0 365 68.2
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 4.7e-145 518.5 399 64.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 8.0e-145 517.7 394 64.0
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 8.9e-144 514.2 415 61.9
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.4e-143 512.3 395 63.0
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 7.5e-143 511.1 359 66.3
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 4.9e-142 508.4 403 61.0
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.5e-140 502.3 360 64.7
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 6.0e-140 501.5 360 65.0
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 5.0e-139 498.4 360 64.2
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.6e-139 497.7 398 62.6
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 8.6e-139 497.7 360 64.7
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 3.3e-138 495.7 366 62.3
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 5.6e-138 495.0 372 66.7
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 7.3e-138 494.6 357 67.5
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 9.5e-138 494.2 414 59.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.6e-137 493.4 360 63.3
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.1e-137 493.0 360 63.3
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.4e-136 490.3 393 60.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.9e-136 487.6 400 61.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.5e-135 486.9 371 66.0
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 6.4e-134 481.5 365 63.8
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 2.4e-133 479.6 363 63.9
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 4.1e-133 478.8 361 64.5
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 5.4e-133 478.4 363 63.6
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.6e-132 476.9 362 63.5
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 4.6e-132 475.3 363 63.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 3.9e-131 472.2 399 57.9
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 3.9e-131 472.2 369 59.6
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.1e-130 470.7 361 63.7
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 9.5e-130 467.6 362 60.8
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.2e-129 467.2 358 62.0
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.8e-129 466.1 393 58.5
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 3.6e-129 465.7 349 64.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 3.6e-129 465.7 399 58.9
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.1e-129 464.5 361 62.3
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.3e-128 463.0 393 58.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.2e-128 461.8 364 60.7
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 8.9e-128 461.1 314 70.7
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 8.9e-128 461.1 367 62.1
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.6e-127 459.5 403 58.6
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.8e-127 458.4 387 57.9
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 4.9e-126 455.3 362 62.2
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.2e-125 451.1 358 62.3
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.6e-124 450.3 358 61.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.1e-124 449.9 375 60.3
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 3.9e-123 445.7 399 57.1
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.5e-122 443.7 453 52.1
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 8.9e-120 434.5 343 61.8
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 2.7e-116 422.9 302 68.5
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.7e-116 422.9 333 63.1
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.0e-115 419.5 386 56.5
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.1e-114 417.5 352 58.8
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-114 417.2 358 57.5
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.5e-111 407.1 356 57.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 4.9e-110 402.1 371 55.8
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 4.2e-109 399.1 349 57.9
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.7e-94 350.5 295 60.7
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.5e-86 321.6 327 48.9
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 3.9e-83 312.8 333 50.8
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 8.7e-83 311.6 205 72.7
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.9e-82 310.5 324 47.5
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 6.3e-81 305.4 322 46.0
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 4.1e-80 302.8 275 58.2
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.9e-80 302.0 359 44.3
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.7e-78 297.4 333 46.5
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.4e-77 294.3 415 41.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 2.0e-74 283.9 301 51.5
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.7e-74 282.3 396 39.9
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.6e-55 221.1 139 72.7
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.6e-55 221.1 223 54.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.7e-55 218.8 173 64.2
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 4.2e-53 213.0 213 52.6
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.8e-39 165.6 196 43.4
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 6.1e-36 156.0 119 60.5
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-33 148.3 212 40.1
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 4.9e-33 146.4 182 42.3
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.3e-30 137.5 125 49.6
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 6.8e-19 99.4 75 58.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.7e-14 84.7 422 23.5
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 3.9e-14 83.6 58 67.2
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.4e-11 74.3 101 43.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.2e-07 62.0 130 35.4
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.7e-07 60.8 45 71.1


User provided reference genes

Program Settings