Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.8e-152 542.0 282 100.0
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 5.3e-135 484.6 265 93.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.0e-126 456.1 265 88.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 4.2e-108 395.2 265 80.0
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.7e-104 382.1 242 83.1
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.5e-100 370.2 265 70.6
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.9e-100 369.8 261 71.6
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.2e-100 369.0 261 71.3
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 4.2e-100 368.6 265 69.4
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 5.5e-100 368.2 263 71.9
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.1e-99 366.3 265 69.4
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.0e-98 364.0 263 70.7
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.8e-98 363.2 265 69.4
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 3.0e-98 362.5 265 68.3
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.0e-98 362.1 261 71.6
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.2e-98 361.7 266 69.5
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 6.7e-98 361.3 256 70.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.8e-98 360.9 265 68.3
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.6e-97 359.4 265 67.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 4.4e-97 358.6 262 69.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 5.7e-97 358.2 262 68.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 5.7e-97 358.2 256 70.3
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 7.4e-97 357.8 265 67.5
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 9.7e-97 357.5 261 68.6
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 9.7e-97 357.5 265 66.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 9.7e-97 357.5 266 68.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.2e-96 356.3 256 69.9
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 3.7e-96 355.5 259 69.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.8e-96 355.1 261 68.6
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 6.3e-96 354.8 265 66.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 8.2e-96 354.4 265 67.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.1e-95 354.0 256 70.3
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-95 354.0 265 64.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.4e-95 353.6 271 67.2
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.4e-95 352.8 274 65.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.4e-95 352.8 265 66.8
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.1e-95 352.4 268 68.3
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 5.3e-95 351.7 255 69.0
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 5.3e-95 351.7 266 68.0
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.0e-94 349.7 273 67.8
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.5e-94 349.0 274 65.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.5e-94 349.0 259 66.8
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 3.5e-94 349.0 259 66.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.9e-94 348.2 265 65.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 7.7e-94 347.8 265 65.3
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.7e-93 346.7 229 74.2
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.7e-93 346.7 259 66.4
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.2e-93 346.3 261 67.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.9e-93 345.9 274 65.0
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.9e-93 345.9 274 65.0
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.9e-93 345.9 274 65.0
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.8e-93 345.5 259 67.6
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 6.5e-93 344.7 274 64.6
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 6.5e-93 344.7 261 66.7
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 8.5e-93 344.4 261 66.7
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.5e-92 343.6 244 70.9
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.5e-92 343.6 256 66.8
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.9e-92 343.2 275 64.0
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.5e-92 342.8 261 65.5
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 2.5e-92 342.8 265 65.3
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.5e-92 342.8 261 66.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.2e-92 342.4 276 63.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.2e-92 342.4 274 64.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.2e-92 342.4 256 66.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 3.2e-92 342.4 255 67.5
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.2e-92 342.0 266 66.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 4.2e-92 342.0 277 64.3
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 5.5e-92 341.7 259 65.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.5e-92 341.7 261 65.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 5.5e-92 341.7 229 74.7
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 9.4e-92 340.9 277 63.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-91 340.5 277 62.8
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-91 340.5 277 62.8
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-91 340.5 277 62.8
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.2e-91 340.5 283 62.9
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.2e-91 340.5 265 64.9
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.2e-91 340.5 229 74.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.6e-91 339.0 263 64.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 4.7e-91 338.6 261 65.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 4.7e-91 338.6 265 66.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 6.1e-91 338.2 277 63.9
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 6.1e-91 338.2 278 62.2
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 6.1e-91 338.2 266 66.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 8.0e-91 337.8 278 62.6
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.0e-90 335.9 261 65.5
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.0e-90 335.9 230 73.0
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.0e-90 335.5 261 65.5
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 5.2e-90 335.1 261 65.1
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 6.8e-90 334.7 266 64.7
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 6.8e-90 334.7 277 63.2
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.2e-89 334.0 286 60.1
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.5e-89 333.6 271 64.2
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 7.5e-89 331.3 268 62.7
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 3.7e-88 328.9 286 59.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.8e-88 328.6 254 65.4
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.1e-87 327.4 271 63.1
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.7e-86 322.8 244 68.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.0e-85 320.9 265 64.2
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.2e-85 319.7 279 60.9
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.9e-85 319.3 216 71.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 6.5e-85 318.2 266 62.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 5.5e-84 315.1 295 57.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 5.5e-84 315.1 280 59.6
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.1e-83 313.2 252 62.3
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.6e-83 312.4 261 64.0
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.4e-82 310.5 229 68.6
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.2e-82 308.5 272 60.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.0e-81 306.6 265 60.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.6e-81 306.2 256 62.1
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.3e-80 303.9 272 59.2
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.3e-80 303.9 219 68.9
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.6e-78 297.0 235 65.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.5e-78 295.8 263 58.9
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 8.6e-77 291.2 264 58.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-75 287.0 229 62.4
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 8.0e-75 284.6 229 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 5.2e-74 282.0 266 54.5
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 8.9e-74 281.2 261 57.1
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.4e-71 273.9 190 73.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.3e-69 267.3 239 54.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.6e-67 260.4 269 49.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.1e-67 260.0 267 52.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.6e-61 238.0 210 63.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.9e-56 222.2 153 69.9
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.1e-55 218.4 197 52.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.0e-54 215.3 197 52.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.8e-54 214.9 197 51.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.7e-53 213.8 197 51.8
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.0e-53 213.0 139 74.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.6e-52 208.8 266 48.1
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-51 205.7 211 57.8
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.9e-50 201.4 224 54.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.1e-46 190.3 135 71.1
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-42 177.9 179 58.1
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.2e-42 175.6 197 45.2
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.2e-41 174.5 223 47.5
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-39 165.6 180 48.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 6.6e-29 132.1 151 53.0
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.5e-28 130.2 193 39.4
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.4e-28 128.6 206 44.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 4.8e-27 125.9 83 75.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.8e-25 119.0 205 36.1
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-24 117.9 220 40.9
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.3e-24 117.9 76 75.0
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.9e-24 116.7 109 56.9
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.9e-24 116.7 109 56.9
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.4e-23 114.4 218 33.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.2e-23 113.2 193 37.8
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-17 94.7 59 78.0
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-17 93.2 62 72.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.5e-17 92.8 57 77.2
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 62 71.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.6e-14 82.8 63 68.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 6.0e-14 82.4 91 48.4
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.7e-12 75.9 58 65.5
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.4e-10 71.2 51 62.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 2.5e-07 60.5 60 55.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 2.5e-07 60.5 60 55.0
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 1.6e-06 57.8 61 50.8
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-06 56.6 92 35.9


User provided reference genes

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