Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 3.8e-56 221.1 98 100.0
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 4.5e-41 171.0 79 87.3
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 5.5e-39 164.1 74 90.5
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 3.0e-37 158.3 75 80.0
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 5.1e-37 157.5 75 81.3
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 1.1e-36 156.4 83 75.9
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.5e-36 156.0 75 77.3
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.0e-36 155.6 76 78.9
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 3.3e-36 154.8 72 81.9
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 5.7e-36 154.1 81 74.1
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 7.4e-36 153.7 99 61.6
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 7.4e-36 153.7 73 82.2
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 9.7e-36 153.3 75 76.0
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.3e-35 152.9 72 80.6
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 1.3e-35 152.9 73 79.5
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 1.7e-35 152.5 77 75.3
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 1.7e-35 152.5 96 63.5
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 1.7e-35 152.5 72 80.6
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 1.7e-35 152.5 75 76.0
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 1.7e-35 152.5 81 71.6
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 2.2e-35 152.1 72 81.9
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 2.2e-35 152.1 72 79.2
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 2.2e-35 152.1 74 79.7
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.2e-35 152.1 76 76.3
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 2.2e-35 152.1 66 92.4
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 2.2e-35 152.1 75 74.7
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.8e-35 151.8 76 75.0
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 2.8e-35 151.8 71 78.9
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 3.7e-35 151.4 72 80.6
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 3.7e-35 151.4 81 74.1
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 3.7e-35 151.4 72 77.8
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 4.8e-35 151.0 75 77.3
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 4.8e-35 151.0 73 79.5
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 6.3e-35 150.6 73 79.5
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 6.3e-35 150.6 72 80.6
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 8.2e-35 150.2 72 76.4
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.1e-34 149.8 73 75.3
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 1.1e-34 149.8 76 72.4
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 1.1e-34 149.8 95 66.3
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 1.1e-34 149.8 75 76.0
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 1.4e-34 149.4 77 75.3
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 1.4e-34 149.4 77 75.3
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 1.4e-34 149.4 77 75.3
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 1.4e-34 149.4 77 75.3
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 1.4e-34 149.4 83 71.1
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 1.4e-34 149.4 83 71.1
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 1.8e-34 149.1 76 73.7
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.8e-34 149.1 81 71.6
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.8e-34 149.1 81 71.6
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.8e-34 149.1 76 73.7
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 2.4e-34 148.7 73 78.1
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 2.4e-34 148.7 72 75.0
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 2.4e-34 148.7 82 70.7
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 3.1e-34 148.3 71 80.3
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 3.1e-34 148.3 74 77.0
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 3.1e-34 148.3 81 74.1
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 3.1e-34 148.3 77 74.0
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 3.1e-34 148.3 77 72.7
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 4.1e-34 147.9 76 72.4
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 4.1e-34 147.9 72 77.8
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 4.1e-34 147.9 73 75.3
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 4.1e-34 147.9 90 64.4
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 5.3e-34 147.5 74 77.0
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 5.3e-34 147.5 89 66.3
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 5.3e-34 147.5 72 75.0
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 5.3e-34 147.5 77 72.7
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 6.9e-34 147.1 72 77.8
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 6.9e-34 147.1 77 71.4
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 6.9e-34 147.1 72 76.4
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 6.9e-34 147.1 81 72.8
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 6.9e-34 147.1 71 78.9
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 6.9e-34 147.1 70 80.0
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.9e-34 147.1 70 80.0
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.9e-34 147.1 70 80.0
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 6.9e-34 147.1 72 76.4
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 9.1e-34 146.7 72 73.6
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 1.2e-33 146.4 94 62.8
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.2e-33 146.4 72 76.4
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 1.2e-33 146.4 71 76.1
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 1.2e-33 146.4 84 66.7
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 1.2e-33 146.4 71 78.9
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 1.2e-33 146.4 72 76.4
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 1.5e-33 146.0 70 80.0
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 1.5e-33 146.0 72 76.4
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.5e-33 146.0 70 80.0
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 1.5e-33 146.0 73 76.7
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 2.0e-33 145.6 76 73.7
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 2.0e-33 145.6 80 68.8
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 2.0e-33 145.6 81 67.9
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.4e-33 144.8 72 76.4
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.4e-33 144.8 72 76.4
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 3.4e-33 144.8 72 76.4
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 4.5e-33 144.4 70 78.6
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 5.9e-33 144.1 74 71.6
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 5.9e-33 144.1 72 73.6
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 5.9e-33 144.1 73 74.0
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 7.7e-33 143.7 73 72.6
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 1.0e-32 143.3 72 73.6
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 1.0e-32 143.3 72 73.6
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 1.0e-32 143.3 81 69.1
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 1.3e-32 142.9 72 73.6
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 1.3e-32 142.9 72 73.6
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 1.3e-32 142.9 73 72.6
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.3e-32 142.9 74 73.0
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 2.2e-32 142.1 72 72.2
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 3.8e-32 141.4 100 61.0
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 3.8e-32 141.4 86 66.3
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 1.9e-31 139.0 74 68.9
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 2.5e-31 138.7 70 72.9
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 9.4e-31 136.7 72 68.1
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.7e-30 135.2 70 72.9
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 4.7e-30 134.4 75 66.7
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 2.0e-28 129.0 68 66.2
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 2.2e-27 125.6 70 71.4
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 2.5e-23 112.1 68 58.8
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 4.0e-13 78.2 44 65.9
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 1.5e-07 59.7 61 37.7


User provided reference genes

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