Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 3.7e-165 585.5 476 100.0
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 4.1e-148 528.9 476 90.8
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 6.4e-109 398.7 474 76.6
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 1.4e-108 397.5 476 76.3
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 1.9e-60 237.7 477 51.4
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 4.0e-58 229.9 471 58.0
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 8.8e-58 228.8 470 54.7
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 2.2e-56 224.2 473 61.9
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 8.2e-56 222.2 477 61.4
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 6.5e-53 212.6 457 60.0
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.1e-52 211.8 470 56.4
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 1.9e-52 211.1 478 54.2
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 3.6e-51 206.8 473 45.7
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 4.7e-51 206.5 479 55.9
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 5.2e-50 203.0 467 57.2
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 1.7e-48 198.0 471 58.8
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 3.7e-48 196.8 457 57.1
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 4.8e-48 196.4 443 61.2
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 2.4e-47 194.1 468 41.5
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 1.2e-46 191.8 459 54.0
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 1.2e-46 191.8 470 53.6
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 2.7e-46 190.7 475 40.0
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 5.9e-46 189.5 478 39.1
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 2.9e-45 187.2 456 40.4
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 1.9e-44 184.5 456 38.8
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.9e-44 184.5 468 53.6
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.9e-44 184.5 472 51.1
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.5e-44 184.1 476 50.8
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.2e-44 183.7 475 44.8
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.2e-44 183.7 475 50.5
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 4.2e-44 183.3 456 38.8
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 4.2e-44 183.3 468 52.6
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 9.5e-44 182.2 468 53.0
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 1.2e-43 181.8 456 39.7
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 1.2e-43 181.8 463 50.5
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.6e-43 181.4 461 38.4
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 2.8e-43 180.6 459 39.9
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 6.1e-43 179.5 475 49.9
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 8.0e-43 179.1 468 52.4
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 1.8e-42 177.9 475 44.8
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 3.4e-41 173.7 447 40.5
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 5.7e-41 172.9 470 40.4
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 7.5e-41 172.6 395 61.8
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 9.8e-41 172.2 471 43.9
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 1.7e-40 171.4 495 41.4
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 2.2e-40 171.0 471 46.5
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 2.8e-40 170.6 471 44.2
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 2.8e-40 170.6 471 44.2
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 2.8e-40 170.6 471 44.2
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 6.3e-40 169.5 477 48.2
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 8.3e-40 169.1 450 49.8
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.8e-39 167.9 447 44.5
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.8e-39 167.9 505 40.4
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.8e-39 167.9 463 45.6
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.4e-39 167.5 448 44.0
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.4e-39 167.5 475 43.4
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 2.4e-39 167.5 450 38.7
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 5.4e-39 166.4 475 50.9
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.2e-38 165.2 472 40.7
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.2e-38 165.2 451 42.8
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 2.0e-38 164.5 466 43.6
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 2.7e-38 164.1 139 56.8
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 4.5e-38 163.3 418 61.2
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 5.9e-38 162.9 291 37.5
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 1.3e-37 161.8 493 34.5
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.3e-37 161.8 431 54.5
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 2.3e-37 161.0 430 46.7
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 2.5e-36 157.5 453 43.9
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 2.5e-36 157.5 458 36.7
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 9.5e-36 155.6 397 30.7
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 9.5e-36 155.6 461 52.9
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 1.2e-35 155.2 468 36.8
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.6e-35 154.8 448 55.8
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 6.1e-35 152.9 453 54.3
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 6.1e-35 152.9 153 50.3
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 8.0e-35 152.5 456 55.0
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 1.4e-34 151.8 168 47.6
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 3.0e-34 150.6 443 42.2
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 3.0e-34 150.6 264 36.7
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 5.2e-34 149.8 448 48.7
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 4.4e-33 146.7 432 44.4
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 5.8e-33 146.4 445 36.4
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.7e-32 144.8 444 35.4
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 2.2e-32 144.4 436 47.9
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.9e-32 144.1 465 34.4
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 3.2e-31 140.6 428 57.5
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 7.0e-31 139.4 136 47.1
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 6.0e-30 136.3 138 44.2
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 4.3e-28 130.2 427 48.7
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 4.7e-27 126.7 378 55.8
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 3.1e-26 124.0 158 43.0
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 5.2e-26 123.2 141 45.4
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 6.8e-26 122.9 394 43.7
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.7e-24 118.2 353 56.4
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 4.9e-24 116.7 129 45.0
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 9.2e-23 112.5 139 36.7
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 2.0e-22 111.3 375 59.2
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 2.0e-22 111.3 410 37.6
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 3.5e-22 110.5 167 37.7
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 3.3e-20 104.0 346 62.4
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 2.6e-17 94.4 376 55.1
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 1.3e-16 92.0 354 55.9
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 8.3e-16 89.4 345 52.2
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.1e-15 89.0 93 52.7
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 6.6e-13 79.7 91 42.9
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 9.5e-12 75.9 73 52.1
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.1e-11 74.7 73 53.4
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 8.1e-11 72.8 87 44.8
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 2.0e-09 68.2 87 46.0
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.0e-09 68.2 73 52.1
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 3.4e-09 67.4 87 36.8
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 4.4e-09 67.0 87 37.9
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 4.4e-09 67.0 83 39.8
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 5.8e-09 66.6 76 39.5
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 1.3e-08 65.5 92 35.9
ATR0787G037 Amborella trichopoda HOM05D006400 ORTHO05D008039 6.4e-08 63.2 73 39.7
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 8.4e-08 62.8 119 29.4
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 1.1e-07 62.4 126 27.8
Aqoxy3G03963 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.4e-07 62.0 140 30.0
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 1.9e-07 61.6 150 28.7
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 5.4e-07 60.1 119 26.9
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 5.4e-07 60.1 119 26.9
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 5.4e-07 60.1 119 28.6
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 7.1e-07 59.7 77 36.4
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 7.1e-07 59.7 68 42.6
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 9.2e-07 59.3 130 25.4
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.6e-06 58.5 132 28.0
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 1.6e-06 58.5 91 34.1
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 2.1e-06 58.2 108 27.8
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 2.1e-06 58.2 116 27.6
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 2.1e-06 58.2 150 27.3
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.1e-06 58.2 119 26.1
ATR1120G019 Amborella trichopoda HOM05D000424 ORTHO05D000355 3.5e-06 57.4 119 24.4
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 4.6e-06 57.0 133 27.8
Oeu056257.1 Olea europaea HOM05D005770 ORTHO05D006702 4.6e-06 57.0 132 24.2
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 4.6e-06 57.0 91 33.0
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 7.8e-06 56.2 132 27.3
GSVIVG01028975001 Vitis vinifera HOM05D005770 ORTHO05D006702 7.8e-06 56.2 97 28.9


User provided reference genes

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