Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-189 666.0 339 100.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 1.5e-139 500.0 375 73.3
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.2e-130 470.3 366 72.4
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 7.5e-128 461.1 375 68.8
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 2.1e-122 443.0 381 63.8
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 1.2e-80 304.3 391 45.3
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 1.4e-78 297.4 399 43.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 2.5e-78 296.6 391 45.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 5.5e-78 295.4 393 44.8
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 9.3e-78 294.7 400 45.2
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.6e-77 293.9 383 46.5
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.6e-77 293.9 386 44.8
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 2.1e-77 293.5 397 45.3
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 4.6e-77 292.4 375 46.7
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.8e-76 290.4 393 44.3
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 8.7e-76 288.1 392 44.9
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.5e-75 287.3 392 44.6
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.5e-75 286.6 392 44.6
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 7.4e-75 285.0 392 44.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 9.6e-75 284.6 380 44.5
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 1.6e-74 283.9 387 46.3
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 2.8e-74 283.1 391 45.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 1.1e-73 281.2 370 45.9
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 5.3e-73 278.9 375 44.5
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 5.3e-73 278.9 369 46.6
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 9.0e-73 278.1 395 43.3
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.6e-72 276.6 387 43.4
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 4.5e-72 275.8 395 45.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 1.7e-71 273.9 376 45.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 3.8e-71 272.7 415 41.4
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 6.5e-71 271.9 365 44.4
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 1.9e-70 270.4 389 43.2
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 4.2e-70 269.2 391 42.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 5.5e-70 268.9 355 47.3
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.2e-69 267.7 367 44.1
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 3.5e-69 266.2 397 39.8
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 3.5e-69 266.2 365 44.1
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 4.6e-69 265.8 386 42.2
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 6.0e-69 265.4 350 45.4
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 6.0e-69 265.4 349 45.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 7.9e-69 265.0 379 44.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 7.9e-69 265.0 379 43.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.0e-68 264.6 376 42.6
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 2.3e-68 263.5 351 44.2
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 3.0e-68 263.1 374 42.5
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.9e-68 262.7 391 43.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 3.9e-68 262.7 373 44.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 3.9e-68 262.7 395 41.5
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 5.1e-68 262.3 358 45.3
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 8.7e-68 261.5 391 42.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.5e-67 260.0 385 41.8
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 3.3e-67 259.6 358 44.7
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 4.3e-67 259.2 352 45.5
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.7e-67 258.8 367 43.1
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 7.4e-67 258.5 372 43.0
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 9.7e-67 258.1 357 45.7
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.3e-66 257.7 358 44.4
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 2.2e-66 256.9 357 45.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 2.2e-66 256.9 357 45.4
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.8e-66 256.5 375 41.9
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 3.7e-66 256.1 359 45.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 3.7e-66 256.1 357 43.1
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 4.8e-66 255.8 394 42.1
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 4.8e-66 255.8 373 43.2
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 4.8e-66 255.8 390 40.5
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.1e-65 254.6 361 41.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.1e-65 254.6 366 43.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.8e-65 253.8 337 46.6
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.8e-65 253.8 379 43.0
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.4e-65 253.4 402 40.3
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.1e-65 253.1 367 42.8
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 3.1e-65 253.1 347 44.4
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 3.1e-65 253.1 360 41.9
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 4.1e-65 252.7 366 46.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 6.9e-65 251.9 375 43.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 2.0e-64 250.4 353 44.5
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.7e-63 247.3 406 39.2
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.7e-63 247.3 366 41.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 3.8e-63 246.1 364 43.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 8.5e-63 245.0 360 42.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 1.1e-62 244.6 359 42.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 4.2e-62 242.7 455 36.9
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.3e-60 236.9 351 41.0
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 3.9e-60 236.1 379 39.1
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.3e-58 231.1 360 40.0
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 2.6e-56 223.4 340 43.8
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 3.8e-55 219.5 378 40.2
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 4.8e-50 202.6 386 34.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 6.3e-42 175.6 185 50.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 9.1e-41 171.8 346 34.1
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.9e-40 169.1 171 53.8
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.0e-36 156.4 134 65.7
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-35 154.5 329 34.7
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.1e-33 146.7 331 33.2
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 9.1e-25 118.6 129 51.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.2e-21 108.2 128 47.7
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 4.7e-21 106.3 330 31.8
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 5.2e-20 102.8 126 44.4
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 7.5e-19 99.0 354 25.7
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.2e-17 93.6 58 72.4
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.9e-16 89.4 80 50.0
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.7e-15 87.8 59 69.5
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.9e-15 86.7 354 26.8
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 9.5e-14 82.0 196 37.2
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 3.4e-11 73.6 78 41.0
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 6.4e-10 69.3 385 23.1
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-07 61.6 42 71.4
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.0e-07 60.5 51 58.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.9e-06 57.8 59 52.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.5e-06 57.4 46 54.3


User provided reference genes

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