Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008283.2 Cucumis melo HOM05D007615 ORTHO05D009643 1.9e-102 375.9 199 100.0
CsaV3_6G001660 Cucumis sativus L. HOM05D007615 ORTHO05D009643 2.4e-97 359.0 199 96.0
ClCG11G006310 Citrullus lanatus HOM05D007615 ORTHO05D009643 2.0e-88 329.3 197 86.3
Sed0010184 Sechium edule HOM05D007615 ORTHO05D009643 4.6e-77 291.6 199 80.4
Sabra10G0147900 Salix brachista HOM05D007615 ORTHO05D009643 7.4e-59 231.1 198 59.6
TAR636G2052 Trochodendron aralioides HOM05D007615 ORTHO05D009643 2.4e-57 226.1 199 59.8
CiPaw.01G296100 Carya illinoinensis HOM05D007615 ORTHO05D009643 4.1e-57 225.3 205 60.0
Potri.010G192300 Populus trichocarpa HOM05D007615 ORTHO05D009643 4.1e-57 225.3 198 58.1
TAR636G3510 Trochodendron aralioides HOM05D007615 ORTHO05D009643 1.2e-56 223.8 199 60.3
RcHm_v2.0_Chr1g0369501 Rosa chinensis HOM05D007615 ORTHO05D009643 1.4e-54 216.9 199 60.8
TWI53G1973 Tripterygium wilfordii HOM05D007615 ORTHO05D009643 7.2e-54 214.5 199 58.3
Atru.chr12.235 Acer truncatum HOM05D007615 ORTHO05D009643 4.7e-53 211.8 197 58.9
Ciclev10032806m.g Citrus clementina HOM05D007615 ORTHO05D009643 6.1e-53 211.5 196 56.1
QL08p062684 Quercus lobata HOM05D007615 ORTHO05D009643 6.1e-53 211.5 198 56.1
FAN01G2468 Fragaria x ananassa HOM05D007615 ORTHO05D009643 1.0e-52 210.7 197 59.9
CANSAT56G1044 Cannabis sativa HOM05D007615 ORTHO05D009643 1.4e-52 210.3 199 58.8
COL.COLO4_24429 Corchorus olitorius HOM05D007615 ORTHO05D009643 1.4e-52 210.3 199 57.8
Prupe.2G246900 Prunus persica HOM05D007615 ORTHO05D009643 2.3e-52 209.5 206 55.8
Rhsim09G0172300 Rhododendron simsii HOM05D007615 ORTHO05D009643 8.8e-52 207.6 198 55.6
Haze_17188 Corylus avellana HOM05D007615 ORTHO05D009643 1.5e-51 206.8 192 61.5
Eucgr.K02662 Eucalyptus grandis HOM05D007615 ORTHO05D009643 2.6e-51 206.1 194 55.2
Psat2g035440 Pisum sativum HOM05D007615 ORTHO05D009643 5.7e-51 204.9 202 52.5
FAN03G2533 Fragaria x ananassa HOM05D007615 ORTHO05D009643 9.7e-51 204.1 199 58.8
FAN06G4073 Fragaria x ananassa HOM05D007615 ORTHO05D009643 9.7e-51 204.1 189 59.8
Actinidia00935 Actinidia chinensis HOM05D007615 ORTHO05D009643 1.7e-50 203.4 198 54.5
Lalb_Chr17g0346631 Lupinus albus HOM05D007615 ORTHO05D009643 2.2e-50 203.0 199 54.8
PGR142G0690 Punica granatum HOM05D007615 ORTHO05D009643 2.2e-50 203.0 199 53.8
Phvul.008G225800 Phaseolus vulgaris HOM05D007615 ORTHO05D009643 3.7e-50 202.2 199 54.3
MD07G1214900 Malus domestica HOM05D007615 ORTHO05D009643 6.3e-50 201.4 199 55.8
Thecc.09G179400 Theobroma cacao HOM05D007615 ORTHO05D009643 1.4e-49 200.3 199 54.8
vmacro10061 Vaccinium macrocarpon HOM05D007615 ORTHO05D009643 1.4e-49 200.3 200 54.0
LjContig00357g0021515 Lotus japonicus HOM05D007615 ORTHO05D009643 1.8e-49 199.9 201 54.2
Gohir.A08G018800 Gossypium hirsutum HOM05D007615 ORTHO05D009643 3.1e-49 199.1 201 53.2
Sc11g0007250 Simmondsia chinensis HOM05D007615 ORTHO05D009643 4.1e-49 198.7 198 56.1
Cpa.g.sc19.199 Carica papaya HOM05D007615 ORTHO05D009643 5.3e-49 198.4 199 53.3
Ca_05936_v3 Cicer arietinum L. HOM05D007615 ORTHO05D009643 7.0e-49 198.0 204 51.0
FAN10G2819 Fragaria x ananassa HOM05D007615 ORTHO05D009643 9.1e-49 197.6 199 57.3
Cfa001360 Carpinus fangiana HOM05D007615 ORTHO05D009643 1.6e-48 196.8 162 65.4
PSO384G4204 Papaver somniferum HOM05D007615 ORTHO05D009643 2.6e-48 196.1 200 51.0
Medtr5g081970 Medicago truncatula HOM05D007615 ORTHO05D009643 1.7e-47 193.4 202 50.0
Glyma.14G061700 Glycine max HOM05D007615 ORTHO05D009643 2.2e-47 193.0 204 52.9
Manes.07G125900 Manihot esculenta HOM05D007615 ORTHO05D009643 2.9e-47 192.6 147 66.7
Gohir.D08G029400 Gossypium hirsutum HOM05D007615 ORTHO05D009643 3.8e-47 192.2 199 50.8
CSS0034825 Camellia sinensis var. sinensis HOM05D007615 ORTHO05D009643 5.0e-47 191.8 168 59.5
Gorai.004G026800 Gossypium raimondii HOM05D007615 ORTHO05D009643 1.1e-46 190.7 201 50.7
VMungo0647G1713 Vigna mungo HOM05D007615 ORTHO05D009643 4.2e-46 188.7 188 53.7
Dinv20960 Davidia involucrata HOM05D000277 ORTHO05D000214 5.5e-46 188.3 171 56.1
Dinv20983 Davidia involucrata HOM05D000277 ORTHO05D000214 5.5e-46 188.3 171 56.1
EL10Ac2g04791 Beta vulgaris HOM05D007615 ORTHO05D009643 9.4e-46 187.6 143 67.8
Cc02_g06860 Coffea canephora HOM05D007615 ORTHO05D009643 9.4e-46 187.6 200 54.0
PSO339G1281 Papaver somniferum HOM05D007615 ORTHO05D009643 9.4e-46 187.6 199 50.3
Aqoxy4G02652 Aquilegia oxysepala HOM05D007615 ORTHO05D009643 2.1e-45 186.4 198 51.0
HanXRQChr07g0202461 Helianthus annuus HOM05D007615 ORTHO05D009643 1.8e-44 183.3 192 51.0
TPR.G19858 Trifolium pratense HOM05D007615 ORTHO05D009643 2.3e-44 183.0 215 48.4
Sopen04g004760 Solanum pennellii HOM05D007615 ORTHO05D009643 3.0e-44 182.6 196 49.0
PGSC0003DMG400016017 Solanum tuberosum HOM05D007615 ORTHO05D009643 3.0e-44 182.6 195 48.2
ECA238G0429 Erigeron canadensis HOM05D007615 ORTHO05D009643 4.0e-44 182.2 195 50.8
Nn2g11402 Nelumbo nucifera HOM05D007615 ORTHO05D009643 7.5e-43 177.9 201 49.3
Duzib170G1068 Durio zibethinus HOM05D007615 ORTHO05D009643 1.7e-42 176.8 183 55.7
Psat3g208000 Pisum sativum HOM05D007615 ORTHO05D009643 2.2e-42 176.4 146 58.2
RcHm_v2.0_Chr3g0468601 Rosa chinensis HOM05D007615 ORTHO05D009643 8.2e-42 174.5 199 53.8
Oeu063511.1 Olea europaea HOM05D007615 ORTHO05D009643 1.1e-41 174.1 145 60.7
Ah.16g103150 Amaranthus hybridus HOM05D007615 ORTHO05D009643 1.8e-41 173.3 174 52.9
Hund13833 Selenicereus undatus HOM05D007615 ORTHO05D009643 5.3e-41 171.8 141 61.0
Nitab4.5_0001654g0050 Nicotiana tabacum HOM05D007615 ORTHO05D009643 1.6e-40 170.2 194 48.5
Nitab4.5_0000737g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 7.7e-40 167.9 141 60.3
DCAR_012632 Daucus carota HOM05D007615 ORTHO05D009643 3.8e-39 165.6 139 61.2
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 6.5e-39 164.9 201 46.3
Lsat_1_v5_gn_2_121681 Lactuca sativa HOM05D000277 ORTHO05D000214 1.9e-38 163.3 171 49.7
AT3G55820 Arabidopsis thaliana HOM05D007615 ORTHO05D009643 2.2e-34 149.8 207 44.0
THA.LOC104810077 Tarenaya hassleriana HOM05D007615 ORTHO05D009643 2.2e-34 149.8 208 41.8
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 3.7e-34 149.1 190 42.6
Aa31LG10G10810 Aethionema arabicum HOM05D007615 ORTHO05D009643 8.3e-34 147.9 203 42.4
AL5G37110 Arabidopsis lyrata HOM05D007615 ORTHO05D009643 1.4e-33 147.1 210 45.2
A09p48810 Brassica napus HOM05D007615 ORTHO05D009643 1.4e-33 147.1 198 44.9
BraA09t40334Z Brassica rapa HOM05D007615 ORTHO05D009643 1.4e-33 147.1 198 44.9
Dinv34419 Davidia involucrata HOM05D007615 ORTHO05D009643 1.4e-33 147.1 201 45.8
Potri.008G065101 Populus trichocarpa HOM05D007615 ORTHO05D009643 1.8e-33 146.7 141 53.2
Thhalv10010736m.g Eutrema salsugineum HOM05D007615 ORTHO05D009643 3.1e-33 146.0 201 44.3
C08p31140 Brassica napus HOM05D007615 ORTHO05D009643 4.1e-33 145.6 200 45.0
CARHR165930 Cardamine hirsuta HOM05D007615 ORTHO05D009643 4.1e-33 145.6 207 44.0
BolC8t50735H Brassica oleracea HOM05D007615 ORTHO05D009643 1.6e-32 143.7 200 44.5
SalBow6G0125 Salvia bowleyana HOM05D007615 ORTHO05D009643 1.6e-32 143.7 184 42.9
Sp5g06670 Schrenkiella parvula HOM05D007615 ORTHO05D009643 1.6e-32 143.7 195 42.6
Migut.F01421 Erythranthe guttata HOM05D007615 ORTHO05D009643 1.7e-31 140.2 193 43.0
Carub.0005s2260 Capsella rubella HOM05D007615 ORTHO05D009643 1.9e-30 136.7 198 43.9
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 7.2e-30 134.8 181 40.9
Peaxi162Scf00079g00249 Petunia axillaris HOM05D007615 ORTHO05D009643 3.6e-29 132.5 118 55.9
unitig_62.g23933 Utricularia gibba HOM05D007615 ORTHO05D009643 3.6e-29 132.5 192 38.5
CDE10G1314 Ceratophyllum demersum HOM05D007615 ORTHO05D009643 1.5e-27 127.1 136 48.5
HPP92_006631 Vanilla planifolia HOM05D007615 ORTHO05D009643 1.7e-26 123.6 152 46.1
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 3.7e-26 122.5 173 42.8
BcaB01g00059 Brassica carinata HOM05D007615 ORTHO05D009643 3.7e-26 122.5 201 38.3
SEGI_38309 Sequoiadendron giganteum HOM05D007615 ORTHO05D009643 6.3e-26 121.7 201 37.3
Nitab4.5_0002613g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 5.7e-19 98.6 78 61.5
Mapoly0011s0100 Marchantia polymorpha HOM05D007615 ORTHO05D009643 1.7e-18 97.1 159 35.2
Oeu046579.1 Olea europaea HOM05D007615 ORTHO05D009643 1.1e-17 94.4 122 46.7
Pp3c3_19950 Physcomitrium patens HOM05D007615 ORTHO05D009643 5.6e-14 82.0 137 31.4
AagrBONN_evm.TU.Sc2ySwM_368.2678 Anthoceros agrestis HOM05D007615 ORTHO05D009643 6.2e-13 78.6 199 27.6
Manes.10G016915 Manihot esculenta HOM05D007615 ORTHO05D009643 8.0e-13 78.2 121 42.1
SMO139G0141 Selaginella moellendorffii HOM05D007615 ORTHO05D009643 1.2e-11 74.3 137 35.8
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 1.2e-11 74.3 137 35.8
Lalb_Chr04g0250741 Lupinus albus HOM05D007615 ORTHO05D009643 6.6e-07 58.5 45 57.8
Sed0006200 Sechium edule HOM05D007615 ORTHO05D009643 1.9e-06 57.0 73 47.9


User provided reference genes

Program Settings