Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.3e-166 589.7 309 100.0
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 7.5e-159 563.9 310 96.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 7.0e-149 530.8 284 98.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.5e-146 523.1 312 90.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 3.0e-131 472.2 310 80.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.5e-130 469.9 310 79.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 79.0
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.5e-130 469.2 310 79.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 4.3e-130 468.4 310 78.7
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.3e-130 468.4 312 79.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 5.6e-130 468.0 310 78.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 9.6e-130 467.2 310 78.4
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.1e-129 466.1 310 77.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 8.1e-129 464.2 310 80.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 2.4e-128 462.6 310 78.1
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.4e-128 462.6 309 78.6
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 5.2e-128 461.5 310 78.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 77.7
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.6e-127 459.1 310 77.1
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 77.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 76.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 77.1
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.2e-126 456.1 310 76.8
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.9e-126 455.7 310 76.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 6.4e-126 454.5 310 76.8
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.4e-125 453.4 310 76.5
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.4e-125 452.6 310 75.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.4e-125 452.6 310 76.1
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.2e-125 452.2 310 76.5
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 7.1e-125 451.1 310 76.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.1e-124 449.5 310 76.8
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.7e-124 449.1 310 76.5
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.5e-124 448.7 310 76.5
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.5e-124 448.7 310 76.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 7.8e-124 447.6 310 77.1
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.3e-123 446.0 310 75.8
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.3e-123 446.0 310 75.2
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 3.9e-123 445.3 317 73.8
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 3.9e-123 445.3 317 73.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.1e-123 444.9 309 75.7
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 5.1e-123 444.9 310 76.1
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 5.1e-123 444.9 310 75.2
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.1e-122 443.7 311 75.6
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.5e-122 442.6 318 74.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.3e-122 442.2 310 74.5
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.3e-122 441.8 318 73.3
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 76.1
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.6e-122 441.4 318 73.9
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 7.3e-122 441.0 318 73.6
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 9.6e-122 440.7 318 73.3
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.6e-121 439.9 319 73.7
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.6e-121 439.9 310 74.2
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.8e-121 438.3 318 73.3
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 6.2e-121 438.0 318 73.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 6.2e-121 438.0 319 73.4
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.2e-121 438.0 318 72.0
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.4e-120 436.0 318 74.2
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.4e-120 436.0 310 73.5
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.4e-120 436.0 319 73.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 6.9e-120 434.5 310 73.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 6.9e-120 434.5 319 72.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.5e-119 433.3 311 72.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.6e-119 432.6 321 72.0
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.4e-119 431.8 311 73.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 7.6e-119 431.0 310 72.9
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.9e-119 430.6 345 68.1
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 9.9e-119 430.6 310 71.9
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.7e-118 429.9 318 70.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.2e-118 429.5 318 71.1
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 2.9e-118 429.1 318 72.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.8e-118 428.7 310 71.9
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.9e-118 428.3 310 72.6
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 6.4e-118 427.9 321 71.0
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 71.9
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.9e-117 426.4 310 72.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.9e-117 426.4 310 71.9
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.2e-116 423.7 319 71.5
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.1e-116 422.9 311 71.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.7e-116 422.5 362 64.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.5e-116 422.2 318 70.1
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 4.6e-116 421.8 310 71.9
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 6.0e-116 421.4 318 71.4
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.7e-115 419.9 312 69.9
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.7e-115 419.9 309 72.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.5e-114 416.8 309 72.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 4.5e-111 405.2 307 69.1
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.7e-110 403.3 310 71.9
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.2e-110 402.9 310 67.4
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.1e-109 400.6 310 68.4
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.1e-109 400.6 312 69.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.9e-109 399.8 297 70.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.4e-109 399.4 310 67.7
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 4.2e-109 398.7 294 70.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.6e-108 396.7 294 70.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.1e-108 396.4 294 70.1
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.3e-107 392.9 278 75.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 6.7e-107 391.3 315 66.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.5e-106 390.2 316 65.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.9e-106 389.8 315 66.3
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.3e-106 389.0 262 76.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.8e-104 383.3 310 65.2
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.8e-104 383.3 296 69.6
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 3.4e-103 379.0 286 68.5
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.5e-103 378.6 321 64.8
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 5.8e-103 378.3 286 68.5
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 8.4e-102 374.4 281 71.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.2e-101 372.5 319 65.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.2e-101 372.5 256 76.6
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.2e-101 372.1 276 70.7
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.6e-100 370.2 312 64.4
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.9e-98 363.2 262 73.3
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.5e-98 362.8 310 66.1
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.4e-98 361.3 310 63.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.3e-94 350.5 262 67.9
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 2.1e-92 343.2 310 63.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.7e-92 342.8 314 59.6
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 4.6e-92 342.0 315 60.6
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-91 340.9 256 69.1
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.2e-89 333.2 309 60.2
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.9e-86 322.8 309 59.5
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.2e-81 304.7 228 70.6
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-80 304.3 242 65.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.4e-80 303.9 221 70.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.4e-74 282.3 740 32.0
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.8e-73 279.6 391 48.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.0e-71 273.5 314 48.7
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.6e-68 263.8 319 48.0
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.8e-67 260.4 314 50.0
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.0e-58 230.3 178 73.6
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.6e-58 229.9 288 46.2
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 3.8e-54 216.1 184 66.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.3e-46 191.0 249 50.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.3e-45 186.4 150 72.0
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.8e-44 183.3 122 85.2
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 2.8e-44 183.3 156 67.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 3.7e-41 172.9 120 82.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.0e-38 164.9 143 64.3
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 5.0e-38 162.5 244 43.9
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 8.0e-36 155.2 112 65.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.5e-34 151.0 313 34.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.2e-33 147.1 250 44.0
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.5e-29 134.4 91 75.8
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.8e-28 130.2 127 63.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.6e-26 123.6 110 59.1
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.4e-26 123.2 145 57.2
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 4.9e-25 119.4 159 47.2
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.7e-22 110.9 89 60.7
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.3e-21 106.3 97 67.0
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 5.6e-21 105.9 100 53.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.9e-16 90.9 70 64.3
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.6e-15 87.8 395 24.8
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.3e-14 84.7 62 75.8
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.0e-10 70.9 84 52.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 5.4e-08 62.8 113 37.2


User provided reference genes

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