Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 4.6e-297 1024.2 699 100.0
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 1.1e-226 790.4 637 91.4
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 4.7e-209 731.9 635 85.7
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 6.8e-184 648.3 634 74.6
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 1.8e-91 341.3 628 50.3
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 6.8e-91 339.3 638 41.1
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 4.4e-90 336.7 635 47.2
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 4.9e-89 333.2 605 51.9
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 1.3e-86 325.1 653 52.5
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 6.6e-86 322.8 636 43.6
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 8.6e-86 322.4 586 42.7
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 1.1e-85 322.0 638 40.0
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 2.5e-85 320.9 640 41.2
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 2.5e-85 320.9 632 38.4
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.5e-85 320.9 623 43.5
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 2.1e-84 317.8 632 45.4
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 2.1e-84 317.8 658 40.3
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 3.6e-84 317.0 596 38.9
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 3.1e-83 313.9 638 38.7
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 8.9e-83 312.4 627 39.4
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 2.4e-80 304.3 633 40.9
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 6.0e-79 299.7 633 36.3
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 1.7e-78 298.1 639 38.3
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 1.1e-77 295.4 636 44.3
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 8.3e-73 279.3 620 35.5
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 2.4e-72 277.7 620 39.7
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 2.4e-72 277.7 620 39.7
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 4.1e-72 276.9 624 35.3
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 7.1e-72 276.2 622 42.0
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 7.1e-72 276.2 637 44.7
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 1.2e-71 275.4 637 40.2
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 2.7e-71 274.2 633 41.7
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 3.5e-71 273.9 629 35.9
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 6.0e-71 273.1 627 35.2
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 3.0e-70 270.8 627 35.1
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 8.6e-70 269.2 639 47.3
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 4.3e-69 266.9 631 37.1
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 1.2e-68 265.4 514 46.9
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 1.1e-67 262.3 636 48.9
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 6.8e-67 259.6 646 42.9
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.0e-66 258.1 636 43.1
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.4e-66 257.3 636 43.2
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.7e-65 255.0 632 43.4
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.2e-65 254.6 631 34.1
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 2.9e-65 254.2 637 46.3
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 1.1e-64 252.3 631 36.3
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.1e-64 252.3 631 34.9
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 1.9e-64 251.5 618 39.3
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 5.4e-64 250.0 645 42.8
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 7.1e-64 249.6 583 46.1
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.2e-63 248.8 638 45.3
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 1.0e-62 245.7 625 42.1
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 1.7e-62 245.0 648 37.0
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 8.7e-62 242.7 599 35.9
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 5.6e-61 240.0 582 40.7
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 9.6e-61 239.2 637 43.8
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 1.1e-59 235.7 634 46.5
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 3.1e-59 234.2 638 43.6
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 5.3e-59 233.4 621 32.4
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 2.6e-58 231.1 637 46.9
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 8.4e-57 226.1 586 39.8
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 1.4e-56 225.3 622 34.1
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 1.9e-56 224.9 624 35.7
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 2.4e-56 224.6 620 48.1
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 5.4e-56 223.4 626 34.2
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 1.2e-55 222.2 631 43.1
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 3.5e-55 220.7 644 40.2
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 1.7e-54 218.4 660 38.5
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 3.9e-54 217.2 639 32.7
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 1.9e-53 214.9 595 33.8
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 2.5e-53 214.5 595 33.9
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 2.5e-53 214.5 578 46.0
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 1.3e-52 212.2 531 46.5
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.6e-52 211.8 621 34.3
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 3.6e-52 210.7 636 32.9
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 4.0e-51 207.2 633 31.4
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 9.0e-51 206.1 618 30.4
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 5.8e-50 203.4 588 34.2
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 3.8e-49 200.7 625 34.6
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 6.4e-49 199.9 467 50.7
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 1.1e-48 199.1 632 32.8
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 1.6e-47 195.3 337 59.1
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.8e-46 191.8 592 33.1
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 2.3e-46 191.4 645 36.4
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 6.7e-46 189.9 622 33.0
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 8.7e-46 189.5 627 30.1
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 4.3e-45 187.2 485 39.0
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.8e-44 183.7 617 35.2
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 8.1e-44 183.0 623 34.0
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.5e-42 178.7 631 30.6
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.6e-42 177.9 624 34.9
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 1.3e-41 175.6 625 34.7
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.7e-41 175.3 572 34.3
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 3.8e-41 174.1 623 36.3
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 3.8e-41 174.1 618 33.2
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 1.4e-40 172.2 623 28.4
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 1.9e-40 171.8 622 31.4
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 2.5e-40 171.4 628 31.8
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 1.6e-39 168.7 647 28.4
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 1.3e-38 165.6 624 28.4
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 1.9e-37 161.8 590 29.3
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 2.5e-37 161.4 576 38.5
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 3.3e-37 161.0 578 28.9
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 4.3e-37 160.6 600 28.7
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 1.6e-36 158.7 313 39.0
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 2.1e-36 158.3 591 28.9
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 2.1e-36 158.3 400 44.2
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 2.8e-36 157.9 498 30.9
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 3.7e-36 157.5 620 40.0
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 8.2e-36 156.4 586 28.5
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 1.4e-35 155.6 627 28.9
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 6.9e-35 153.3 621 27.5
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 9.0e-35 152.9 625 27.8
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 2.6e-34 151.4 581 31.3
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 3.4e-34 151.0 585 32.5
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 3.4e-34 151.0 630 28.6
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 7.6e-34 149.8 585 29.6
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 2.2e-33 148.3 586 33.8
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 2.5e-32 144.8 592 28.4
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 2.7e-31 141.4 455 28.6
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.3e-28 132.5 616 31.3
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 2.0e-26 125.2 486 26.7
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 2.0e-26 125.2 573 35.1
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 5.9e-26 123.6 581 27.5
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 1.3e-25 122.5 580 27.6
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 1.3e-25 122.5 491 26.7
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 6.5e-25 120.2 555 26.7
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 1.9e-24 118.6 590 28.5
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 1.0e-22 112.8 195 40.5
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 3.3e-21 107.8 518 30.7
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.1e-19 102.8 207 40.6
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 2.5e-16 91.7 472 37.3
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 5.5e-16 90.5 496 26.8
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 2.7e-15 88.2 477 37.1
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 4.7e-15 87.4 211 34.6
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 3.9e-14 84.3 119 46.2
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.1e-13 82.8 198 31.8
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.5e-13 82.4 622 30.2
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.3e-12 79.3 645 25.7
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 2.8e-12 78.2 638 22.4
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 2.8e-12 78.2 209 30.6
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 2.8e-12 78.2 549 29.7
C09p46840 Brassica napus HOM05D001827 ORTHO05D001790 4.8e-12 77.4 209 30.6
BolC9t57534H Brassica oleracea HOM05D001827 ORTHO05D001790 4.8e-12 77.4 209 30.6
CARHR269240 Cardamine hirsuta HOM05D001827 ORTHO05D001790 8.2e-12 76.6 212 31.1
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 8.2e-12 76.6 173 36.4
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 1.8e-11 75.5 102 45.1
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 3.1e-11 74.7 643 28.9
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 4.1e-11 74.3 644 22.0
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 4.1e-11 74.3 164 37.2
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 7.0e-11 73.6 643 28.0
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 1.3e-09 69.3 137 37.2
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 2.2e-09 68.6 638 21.6
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 2.9e-09 68.2 399 30.6
Phvul.008G279900 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 3.8e-09 67.8 578 31.5
Carub.0008s1622 Capsella rubella HOM05D001827 ORTHO05D001790 5.0e-09 67.4 209 31.6
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.1e-08 66.2 588 27.6
Lj8C179T7 Lonicera japonica HOM05D001827 ORTHO05D001790 1.9e-08 65.5 128 36.7
Peaxi162Scf00006g00416 Petunia axillaris HOM05D001827 ORTHO05D001790 3.2e-08 64.7 152 34.2
Sp6g17740 Schrenkiella parvula HOM05D001827 ORTHO05D001790 3.2e-08 64.7 661 31.0
AL8G31440 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 4.2e-08 64.3 659 31.6
A10p13080 Brassica napus HOM05D001827 ORTHO05D001790 5.5e-08 63.9 596 32.4
Nn1g07551 Nelumbo nucifera HOM05D001827 ORTHO05D001790 5.5e-08 63.9 209 29.7
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 7.2e-08 63.5 126 39.7
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 7.2e-08 63.5 206 31.6
Thhalv10012934m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 1.2e-07 62.8 656 35.7
AT5G55860 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 2.1e-07 62.0 665 32.8
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 2.7e-07 61.6 318 25.5
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 3.6e-07 61.2 643 23.5
HPP92_020563 Vanilla planifolia HOM05D001827 ORTHO05D001790 4.7e-07 60.8 133 33.8
AUR62016893 Chenopodium quinoa HOM05D022647 ORTHO05D005456 6.1e-07 60.5 95 48.4
AUR62044563 Chenopodium quinoa HOM05D022647 ORTHO05D005456 6.1e-07 60.5 95 48.4
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 6.1e-07 60.5 219 29.2
HPP92_020565 Vanilla planifolia HOM05D001827 ORTHO05D001790 8.0e-07 60.1 133 34.6
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 1.0e-06 59.7 642 21.0
PGR083G1584 Punica granatum HOM05D001827 ORTHO05D001790 1.4e-06 59.3 585 27.7
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 1.8e-06 58.9 634 20.5
THA.LOC104811675 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 3.0e-06 58.2 668 24.7
AUR62039051 Chenopodium quinoa HOM05D004905 ORTHO05D005456 6.7e-06 57.0 95 46.3
Glyma.18G156550 Glycine max HOM05D004905 ORTHO05D005456 6.7e-06 57.0 108 38.9
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 8.8e-06 56.6 506 23.1
Migut.H01749 Erythranthe guttata HOM05D001827 ORTHO05D001790 8.8e-06 56.6 581 25.3
Lj1C892G3 Lonicera japonica HOM05D001827 ORTHO05D001790 8.8e-06 56.6 137 31.4


User provided reference genes

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