Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 0.0e+00 1103.6 600 100.0
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 2.1e-242 842.4 477 97.3
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 1.4e-217 760.0 495 86.1
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 1.0e-204 717.2 477 84.7
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 5.0e-183 645.2 479 70.8
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 5.0e-183 645.2 478 69.5
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 8.5e-183 644.4 479 70.1
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.0e-180 636.0 475 70.5
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 8.8e-180 634.4 475 69.9
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 1.1e-179 634.0 478 69.5
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.0e-179 633.3 475 70.3
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 7.4e-179 631.3 478 72.0
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.3e-178 630.6 478 68.6
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 7.0e-177 624.8 480 68.5
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.2e-176 624.0 478 67.6
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 2.6e-176 622.9 478 68.8
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 4.5e-176 622.1 477 69.0
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.0e-175 620.9 478 69.0
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 3.8e-175 619.0 477 68.1
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.8e-175 619.0 478 68.0
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 8.5e-175 617.8 479 67.6
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 7.2e-174 614.8 481 67.2
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 9.4e-174 614.4 495 66.5
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.7e-173 612.8 479 67.4
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 2.7e-173 612.8 478 68.0
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 4.7e-173 612.1 477 71.5
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 4.7e-173 612.1 479 67.2
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 6.1e-173 611.7 477 67.7
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 1.0e-172 610.9 477 67.3
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.4e-172 610.5 479 66.8
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.4e-172 610.5 479 67.8
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.4e-172 610.5 474 67.9
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.3e-172 609.8 515 63.1
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 5.2e-172 608.6 479 67.2
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 5.2e-172 608.6 478 66.9
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.6e-171 606.3 478 66.5
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 4.4e-171 605.5 481 66.7
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 5.7e-171 605.1 479 66.8
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 5.7e-171 605.1 470 67.0
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 8.2e-170 601.3 479 67.8
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 5.3e-169 598.6 483 66.7
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.6e-168 597.0 478 64.2
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.0e-168 596.7 478 65.5
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 3.5e-168 595.9 483 63.8
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 4.5e-168 595.5 478 64.0
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 7.7e-168 594.7 477 65.6
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 7.7e-168 594.7 483 63.6
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 1.0e-167 594.3 477 66.0
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.7e-167 593.6 479 68.5
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.2e-167 593.2 483 63.6
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.9e-167 592.8 477 65.0
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 1.1e-166 590.9 478 65.5
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 1.9e-166 590.1 479 67.6
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.9e-166 590.1 487 63.2
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 5.5e-166 588.6 483 62.9
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 7.2e-166 588.2 476 64.3
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 2.1e-165 586.6 479 63.5
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 4.7e-165 585.5 477 64.6
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 6.1e-165 585.1 477 64.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.8e-164 583.6 510 62.4
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 1.8e-164 583.6 479 65.6
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 5.2e-164 582.0 481 64.7
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.0e-163 580.1 479 64.7
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.7e-162 577.0 479 65.1
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 2.2e-162 576.6 479 66.4
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 1.1e-161 574.3 476 64.1
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 7.0e-161 571.6 477 63.7
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 1.2e-160 570.9 477 63.1
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 1.2e-160 570.9 477 63.1
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 1.2e-160 570.9 477 63.1
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 2.7e-160 569.7 478 64.0
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 5.9e-160 568.5 477 63.5
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 1.3e-159 567.4 476 64.1
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 8.5e-159 564.7 477 62.1
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 8.5e-159 564.7 478 63.6
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.5e-158 563.1 477 62.9
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 5.5e-158 562.0 477 61.4
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.6e-157 559.3 477 62.5
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 4.7e-157 558.9 475 63.4
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 2.3e-156 556.6 477 61.8
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 5.2e-156 555.4 421 69.6
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 3.7e-154 549.3 475 61.5
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 1.1e-153 547.7 477 61.6
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 5.4e-153 545.4 479 62.6
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 5.5e-150 535.4 532 56.6
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 8.9e-148 528.1 474 61.4
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.2e-146 523.5 477 60.2
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 5.4e-145 518.8 408 67.4
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.3e-143 514.2 486 58.4
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 4.3e-142 509.2 476 59.2
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.2e-141 507.7 421 62.7
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 4.7e-141 505.8 468 58.1
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 3.1e-140 503.1 477 58.7
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 8.9e-140 501.5 432 64.1
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 2.6e-139 500.0 375 68.8
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.7e-138 497.3 487 59.1
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 2.4e-137 493.4 368 70.1
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 3.2e-137 493.0 374 69.8
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 3.9e-135 486.1 577 49.6
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.6e-133 480.7 442 60.6
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 2.1e-133 480.3 485 53.4
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.4e-129 467.6 379 64.1
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 8.6e-119 431.8 478 51.3
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 4.3e-118 429.5 311 70.1
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 8.1e-117 425.2 338 65.1
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 3.4e-115 419.9 344 64.8
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 5.6e-110 402.5 309 68.3
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 7.1e-105 385.6 450 49.8
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 7.8e-104 382.1 448 53.3
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.3e-103 381.3 375 52.8
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 8.7e-103 378.6 446 49.3
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.8e-101 373.6 450 48.4
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 1.2e-99 368.2 445 47.9
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.4e-99 366.7 448 47.5
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 9.9e-99 365.2 808 33.7
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.3e-98 364.8 445 47.0
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 3.9e-95 353.2 476 45.4
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.4e-92 344.7 476 45.2
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 5.3e-92 342.8 446 46.2
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 2.9e-90 337.0 365 51.2
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 8.4e-90 335.5 364 50.5
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 3.2e-89 333.6 247 68.8
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 9.6e-86 322.0 442 42.3
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 2.9e-82 310.5 406 43.6
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 4.6e-80 303.1 498 39.2
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.5e-78 298.1 405 43.7
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.3e-77 295.0 453 43.0
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 7.9e-72 275.8 497 37.6
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 5.1e-71 273.1 228 63.6
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.1e-68 265.4 240 60.0
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.2e-59 235.3 307 45.6
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.9e-55 220.3 251 49.0
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.9e-50 204.1 203 54.7
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.7e-37 161.8 447 28.9
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.8e-37 161.0 515 28.3
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.4e-36 158.7 176 52.8
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 3.8e-34 150.6 199 42.7
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 2.0e-30 138.3 101 67.3
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 5.4e-28 130.2 105 62.9
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 9.8e-14 82.8 78 48.7
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 3.1e-07 61.2 144 28.5
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 2.0e-06 58.5 361 21.6
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 2.0e-06 58.5 77 50.6


User provided reference genes

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