Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.1e-98 362.5 196 100.0
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.0e-89 332.0 196 91.8
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.1e-65 253.8 201 74.6
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.1e-33 147.5 196 46.9
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 5.3e-33 145.2 192 50.0
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 9.0e-33 144.4 169 52.1
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.5e-32 142.1 199 47.7
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 7.6e-32 141.4 196 45.9
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 6.4e-31 138.3 199 50.3
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.4e-30 137.1 193 45.1
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 3.2e-30 136.0 180 48.3
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.3e-30 134.4 172 48.3
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 9.3e-30 134.4 163 46.6
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.7e-29 132.9 169 47.3
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.0e-29 131.7 172 48.8
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 7.9e-29 131.3 171 47.4
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 7.9e-29 131.3 193 42.0
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.0e-28 129.4 172 48.3
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 6.7e-28 128.3 193 46.1
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.5e-27 127.1 179 45.8
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.5e-27 127.1 156 47.4
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.9e-27 126.7 197 43.1
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.3e-27 125.9 197 42.6
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 4.3e-27 125.6 147 46.9
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 5.6e-27 125.2 197 43.1
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 5.6e-27 125.2 199 40.2
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 7.4e-27 124.8 195 42.1
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.1e-26 123.2 155 46.5
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 2.8e-26 122.9 165 46.7
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.7e-26 122.5 199 42.7
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.1e-25 120.9 147 49.7
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-25 120.6 168 44.0
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.8e-25 120.2 155 48.4
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.8e-25 120.2 193 44.6
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.4e-25 119.8 152 48.7
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.0e-25 119.0 197 42.6
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.0e-25 119.0 197 42.6
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 5.3e-25 118.6 171 45.0
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 6.9e-25 118.2 208 41.3
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 6.9e-25 118.2 149 46.3
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.0e-25 117.9 152 44.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 2.6e-24 116.3 171 42.7
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 5.8e-24 115.2 180 43.9
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 7.6e-24 114.8 161 46.6
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 7.6e-24 114.8 161 46.6
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.0e-23 114.4 148 46.6
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.0e-23 114.4 183 43.2
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 1.0e-23 114.4 190 40.5
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-23 114.0 158 46.2
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.3e-23 114.0 178 45.5
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.7e-23 113.6 204 40.2
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.7e-23 113.6 143 49.7
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.2e-23 113.2 159 43.4
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 2.2e-23 113.2 155 44.5
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 2.2e-23 113.2 154 42.9
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 4.9e-23 112.1 174 47.1
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 4.9e-23 112.1 166 44.6
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 4.9e-23 112.1 159 43.4
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 6.5e-23 111.7 165 42.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 6.5e-23 111.7 155 43.2
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-22 110.9 171 43.9
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.4e-22 110.5 151 46.4
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.9e-22 110.2 176 43.8
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 2.5e-22 109.8 193 37.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 4.2e-22 109.0 166 40.4
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 4.2e-22 109.0 166 40.4
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 4.2e-22 109.0 175 42.3
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 4.2e-22 109.0 166 44.6
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.5e-22 108.6 167 41.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 7.1e-22 108.2 199 45.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 9.3e-22 107.8 140 45.7
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.2e-21 107.5 154 45.5
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.6e-21 107.1 179 40.8
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 2.1e-21 106.7 200 37.5
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 4.6e-21 105.5 154 40.9
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 4.6e-21 105.5 172 42.4
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 4.6e-21 105.5 163 42.9
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.0e-21 105.1 166 40.4
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 7.9e-21 104.8 168 41.1
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 7.9e-21 104.8 193 39.4
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 7.9e-21 104.8 159 42.8
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 7.9e-21 104.8 157 44.6
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.0e-20 104.4 146 41.8
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-20 103.6 193 39.4
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 3.9e-20 102.4 169 39.1
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 3.9e-20 102.4 169 39.1
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 3.9e-20 102.4 169 39.1
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 5.1e-20 102.1 164 40.2
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 5.1e-20 102.1 170 40.0
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 8.7e-20 101.3 171 40.9
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.1e-19 100.9 162 43.8
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-19 100.5 190 41.1
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.9e-19 100.1 152 41.4
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.9e-19 100.1 152 41.4
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.9e-19 100.1 162 38.3
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.3e-19 99.4 150 40.7
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.3e-19 99.4 174 39.1
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.3e-19 99.0 193 38.3
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 5.7e-19 98.6 178 41.6
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 7.4e-19 98.2 146 44.5
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.3e-18 97.4 165 43.0
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.6e-18 97.1 159 39.0
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 2.2e-18 96.7 148 45.9
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 2.2e-18 96.7 164 39.6
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.8e-18 96.3 172 40.1
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 2.4e-17 93.2 148 41.9
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.1e-17 92.8 155 40.0
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 3.1e-17 92.8 155 40.0
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 5.3e-17 92.0 192 45.3
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 5.3e-17 92.0 148 41.2
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 9.0e-17 91.3 151 43.7
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.2e-16 90.9 158 36.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.5e-16 90.5 193 39.9
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.0e-16 90.1 165 42.4
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.6e-16 89.7 151 41.7
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 5.9e-16 88.6 153 41.8
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.3e-15 87.4 192 33.3
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.7e-15 87.0 164 38.4
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 5.0e-15 85.5 141 42.6
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 8.5e-15 84.7 180 37.2
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.5e-14 83.2 141 39.7
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.5e-14 83.2 167 37.1
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 3.2e-14 82.8 148 38.5
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 5.5e-14 82.0 200 35.0
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 7.2e-14 81.6 134 40.3
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.6e-13 80.5 188 33.0
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.6e-13 80.5 152 37.5
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 4.6e-13 79.0 155 40.0
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 6.1e-13 78.6 173 35.3
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.3e-12 76.6 129 43.4
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 8.8e-12 74.7 192 34.4
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.1e-11 74.3 174 33.3
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.7e-10 70.5 103 43.7
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 4.8e-10 68.9 159 32.7
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.1e-09 66.2 140 37.9
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 4.1e-09 65.9 171 33.9
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-08 64.3 138 37.0
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.5e-08 62.4 178 32.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 5.9e-08 62.0 89 43.8
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.0e-07 61.2 160 35.0
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-07 60.5 141 34.8
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.9e-06 57.0 148 35.1
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.5e-06 56.6 92 38.0


User provided reference genes

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