Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 2907.5 1465 100.0
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 2599.7 1472 90.5
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 2489.5 1471 87.0
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1734.5 1114 80.8
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1673.3 1464 62.1
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1671.4 1496 61.4
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1664.4 1467 62.7
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1644.0 1474 60.9
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1632.5 1483 60.4
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1616.7 1477 60.0
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1611.7 1480 60.1
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1607.4 1475 59.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1603.6 1466 59.9
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1603.2 1492 59.6
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1600.5 1479 58.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1597.8 1475 58.8
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1577.0 1476 59.4
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1571.6 1486 57.5
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1565.8 1479 57.5
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1562.4 1487 58.6
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1541.9 1487 56.9
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1536.9 1496 57.8
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1529.6 1498 57.1
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1529.2 1469 57.4
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1520.0 1473 58.0
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1518.4 1488 57.1
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1517.3 1488 55.8
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1511.9 1482 56.3
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1508.8 1497 56.0
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1507.3 1481 56.2
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1502.3 1493 55.9
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1501.1 1473 56.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1487.6 1477 55.7
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1481.5 1477 55.8
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1472.6 1476 56.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1464.1 1489 54.9
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1456.8 1480 54.7
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1456.4 1548 53.4
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1449.5 1490 56.0
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1421.0 1468 56.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1413.7 1529 54.8
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1409.0 1272 60.8
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1405.6 1492 55.1
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1402.1 1476 53.3
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1402.1 1470 55.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1394.4 1492 53.3
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1389.4 1476 52.9
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1377.1 1530 53.6
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1373.6 1485 53.1
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1370.1 1494 52.5
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1369.4 1498 52.9
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1365.5 1456 53.7
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1359.7 1482 52.8
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1359.0 1397 55.3
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1352.0 1507 53.1
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1352.0 1340 57.1
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1343.6 1502 52.7
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1338.9 1476 52.3
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1338.6 1283 58.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1329.7 1481 53.1
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1323.1 1500 51.1
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1315.4 1480 51.2
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1308.5 1511 51.4
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1302.7 1281 55.9
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1299.6 1476 51.9
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1299.6 1473 51.2
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1297.3 1475 51.8
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1297.3 1466 52.5
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1297.0 1498 51.3
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1292.7 1475 51.5
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1289.2 1477 50.9
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1287.3 1430 51.7
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1285.0 1477 51.7
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1280.0 1471 50.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1278.1 1499 50.6
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1254.6 1465 50.8
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1238.4 1460 50.6
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1238.0 1460 50.5
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1236.5 1468 50.7
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1236.1 1470 50.6
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1232.6 1471 50.6
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1198.3 1407 48.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1196.0 1473 48.8
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1179.9 1479 48.7
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1172.9 1328 52.0
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1168.7 1343 50.6
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1147.1 1474 45.4
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1135.9 1469 45.7
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1114.8 1326 50.6
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1104.0 1120 55.3
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1102.4 1060 59.4
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.2e-310 1070.5 937 61.3
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.2e-299 1033.9 1366 45.8
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 1.0e-298 1030.8 1156 52.7
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 5.3e-271 938.7 1353 43.1
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.0e-261 907.9 1069 50.8
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.0e-222 777.3 1539 36.3
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.7e-222 776.9 1388 38.5
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 1.9e-215 754.2 1551 35.9
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.1e-210 738.4 972 47.1
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 7.1e-207 725.7 950 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 4.7e-203 713.0 1545 34.0
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 1.0e-197 695.3 849 47.9
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 6.0e-190 669.5 518 64.9
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 4.2e-159 567.0 413 66.8
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 3.1e-154 550.8 1721 29.9
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 5.9e-153 546.6 875 42.3
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 3.0e-149 534.3 599 53.1
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.4e-114 419.1 429 53.6
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.8e-114 418.7 674 43.3
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.6e-102 379.0 1364 28.2
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 5.8e-100 370.5 446 49.1
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.2e-94 352.8 591 40.3
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 1.5e-79 302.8 406 46.3
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 9.3e-74 283.5 226 64.2
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 3.5e-73 281.6 794 32.5
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 6.9e-61 240.7 348 45.1
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 1.6e-57 229.6 261 50.2
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 6.0e-57 227.6 1134 26.2
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 4.7e-33 148.3 151 57.6
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 6.3e-30 137.9 260 38.5
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.8e-22 111.7 74 73.0
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 6.1e-17 94.7 83 55.4
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 8.0e-17 94.4 67 62.7
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.2e-12 80.5 86 52.3
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.0e-12 79.7 103 43.7
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.8e-11 75.5 58 62.1
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 5.0e-11 75.1 56 64.3
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.9e-10 73.2 66 56.1
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.7e-09 68.6 56 55.4
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 6.1e-09 68.2 43 74.4
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.8e-08 66.6 102 40.2


User provided reference genes

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