Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.8e-99 365.9 185 100.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.9e-97 358.6 185 97.8
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 5.2e-91 337.8 180 93.9
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 5.4e-80 301.2 182 84.1
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.0e-78 297.0 172 84.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.5e-74 283.1 175 84.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 9.9e-74 280.4 174 81.0
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 2.9e-73 278.9 175 79.4
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.1e-72 276.9 174 82.2
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.2e-72 275.4 176 80.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.2e-71 273.5 176 77.3
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.2e-71 273.5 173 78.6
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.7e-71 272.3 174 78.7
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.7e-71 272.3 175 76.6
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 3.5e-71 271.9 183 75.4
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.5e-71 271.9 182 73.6
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.3e-70 270.0 175 77.7
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.8e-70 269.6 181 74.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.8e-70 269.6 176 75.0
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 3.9e-70 268.5 173 75.7
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 5.1e-70 268.1 174 76.4
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 5.1e-70 268.1 176 76.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 6.7e-70 267.7 171 79.5
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 8.7e-70 267.3 176 77.3
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 8.7e-70 267.3 174 76.4
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.1e-69 266.9 175 76.0
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.9e-69 266.2 173 74.6
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.5e-69 265.8 174 74.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 5.6e-69 264.6 176 73.9
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 7.4e-69 264.2 186 73.7
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 9.6e-69 263.8 175 78.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.6e-68 263.1 174 77.0
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 8.1e-68 260.8 185 74.6
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.4e-67 260.0 175 74.3
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.8e-67 259.6 175 78.3
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.4e-67 259.2 176 73.9
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.4e-66 255.4 193 69.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 7.6e-66 254.2 175 75.4
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 9.9e-66 253.8 174 74.1
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-65 253.1 176 72.7
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.9e-65 252.3 174 72.4
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.9e-65 252.3 174 71.8
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.9e-65 251.5 176 72.2
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.9e-65 251.5 176 72.2
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.1e-64 250.4 174 73.6
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.4e-64 250.0 175 74.9
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.4e-64 250.0 176 70.5
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.9e-64 249.6 178 70.8
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.9e-64 249.6 169 76.3
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.4e-64 249.2 175 70.3
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 3.2e-64 248.8 159 78.6
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 4.2e-64 248.4 182 69.8
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 9.3e-64 247.3 178 70.2
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-63 246.1 177 67.8
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-63 246.1 179 67.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 2.1e-63 246.1 179 67.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.1e-63 246.1 177 67.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 2.1e-63 246.1 169 74.0
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.1e-63 246.1 191 69.1
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.7e-63 245.7 160 80.0
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 3.5e-63 245.4 185 71.4
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.5e-63 245.4 179 67.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 4.6e-63 245.0 175 72.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 6.0e-63 244.6 187 67.4
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 6.0e-63 244.6 175 72.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 7.9e-63 244.2 191 70.2
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-62 243.8 175 69.7
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.0e-62 243.8 175 69.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.0e-62 243.8 185 65.9
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.3e-62 243.4 175 72.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 2.3e-62 242.7 169 73.4
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.0e-62 242.3 165 72.7
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.0e-62 242.3 175 69.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 3.0e-62 242.3 178 69.7
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 5.1e-62 241.5 175 69.1
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.1e-62 241.5 182 71.4
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 8.7e-62 240.7 175 68.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 8.7e-62 240.7 175 68.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.1e-61 240.4 175 70.3
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.5e-61 240.0 159 76.7
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 2.5e-61 239.2 174 68.4
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 2.5e-61 239.2 175 69.7
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.5e-61 239.2 179 65.9
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.3e-61 238.8 172 70.3
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.3e-61 238.4 203 64.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 4.3e-61 238.4 166 71.7
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 5.6e-61 238.0 160 75.0
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.6e-61 238.0 191 67.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.4e-61 237.7 179 68.7
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 7.4e-61 237.7 191 66.5
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.3e-60 236.9 178 68.0
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.3e-60 236.9 152 76.3
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.3e-60 236.9 172 70.9
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.6e-60 236.5 160 76.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.6e-60 236.5 175 66.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.1e-60 236.1 172 69.2
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 2.1e-60 236.1 180 70.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 3.7e-60 235.3 174 67.2
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 3.7e-60 235.3 175 66.9
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.8e-60 235.0 171 70.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 6.2e-60 234.6 158 75.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.2e-60 234.6 174 65.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.8e-59 233.0 193 65.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.8e-59 233.0 250 55.2
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 3.1e-59 232.3 170 70.6
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.0e-58 229.6 170 68.2
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.5e-58 228.4 198 64.6
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 4.5e-58 228.4 174 64.4
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 2.9e-57 225.7 177 64.4
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.1e-56 223.8 204 59.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 3.2e-56 222.2 174 67.2
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 5.5e-56 221.5 176 64.2
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 9.3e-56 220.7 176 64.2
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.2e-55 220.3 175 62.3
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.6e-55 219.9 188 63.3
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.7e-55 219.2 171 65.5
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.5e-55 218.8 161 68.9
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.5e-55 218.8 161 68.9
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.6e-55 218.4 161 68.3
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 4.6e-55 218.4 172 66.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.0e-54 217.2 157 65.0
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-54 216.9 199 60.3
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 2.3e-54 216.1 156 69.9
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.1e-53 213.8 175 65.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-53 213.4 161 68.9
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 4.3e-53 211.8 175 61.1
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 3.4e-50 202.2 121 78.5
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.5e-50 201.8 121 81.0
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.0e-49 200.7 157 61.8
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.3e-49 200.3 120 80.8
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.3e-49 200.3 129 79.1
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.7e-49 199.9 157 60.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 8.5e-49 197.6 161 67.1
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.2e-48 195.7 120 80.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 7.2e-48 194.5 126 76.2
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 9.3e-48 194.1 122 82.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.6e-47 193.4 129 76.0
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 3.0e-46 189.1 132 73.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.1e-46 188.3 121 76.9
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 6.7e-46 188.0 155 65.8
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 4.5e-42 175.3 130 69.2
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.9e-41 172.6 120 70.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.2e-39 167.2 117 68.4
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.1e-39 166.4 149 53.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.0e-38 164.1 140 60.0
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 8.8e-38 161.0 158 52.5
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.5e-37 160.2 130 60.8
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 4.4e-37 158.7 151 51.7
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 7.4e-37 157.9 152 52.0
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.4e-37 157.9 144 53.5
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-33 147.1 89 82.0
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.9e-33 146.0 145 50.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 6.5e-33 144.8 116 62.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 8.5e-33 144.4 164 48.2
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.2e-28 129.8 108 60.2
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 7.7e-26 121.3 115 59.1
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 7.5e-21 104.8 164 42.1
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.8e-19 100.1 88 61.4
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.8e-12 75.5 78 44.9
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 9.1e-11 71.2 46 69.6
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 7.7e-10 68.2 42 78.6
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 71.7
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 71.7
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.5e-08 63.9 44 72.7
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 5.5e-08 62.0 47 68.1


User provided reference genes

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