Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 9.3e-135 483.8 291 100.0
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 1.3e-117 426.8 297 89.2
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 9.4e-103 377.5 358 63.7
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 4.1e-98 362.1 288 70.5
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 1.2e-68 264.2 288 64.2
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 8.3e-67 258.1 286 55.6
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 5.4e-66 255.4 286 51.7
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 1.5e-63 247.3 288 50.7
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 2.8e-62 243.0 288 51.4
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 1.5e-60 237.3 283 48.1
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 5.8e-60 235.3 283 49.8
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 8.3e-59 231.5 283 47.7
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.4e-58 230.7 283 48.1
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.9e-58 230.3 282 48.2
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 3.2e-58 229.6 283 47.7
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 5.4e-58 228.8 283 47.3
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 7.0e-58 228.4 288 50.7
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.7e-56 223.8 283 47.7
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.7e-56 223.8 283 48.1
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.7e-56 223.8 288 48.6
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 5.0e-56 222.2 268 62.3
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 6.6e-56 221.9 281 48.4
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.5e-55 220.7 291 45.7
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 1.9e-55 220.3 288 47.2
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 3.3e-55 219.5 288 45.5
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 7.3e-55 218.4 268 48.1
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 2.3e-53 213.4 289 43.9
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 1.5e-52 210.7 288 44.4
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 2.0e-52 210.3 268 49.3
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 4.4e-52 209.1 283 45.9
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 3.7e-51 206.1 288 49.3
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.4e-50 204.1 291 44.0
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 1.2e-49 201.1 288 41.0
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 1.6e-49 200.7 288 42.7
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 2.1e-49 200.3 294 42.9
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 2.1e-49 200.3 325 40.6
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 4.6e-49 199.1 282 43.6
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 1.3e-48 197.6 268 45.1
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 6.6e-48 195.3 291 41.2
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 1.2e-46 191.0 289 42.2
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 2.8e-46 189.9 286 40.9
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 3.6e-46 189.5 283 38.9
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.4e-45 187.6 272 43.8
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 2.3e-45 186.8 291 51.9
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 2.3e-45 186.8 280 39.3
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 4.0e-45 186.0 286 38.5
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 8.9e-45 184.9 288 41.3
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 2.0e-44 183.7 286 41.3
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 4.4e-44 182.6 288 39.6
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 1.3e-43 181.0 286 40.2
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 1.7e-43 180.6 286 41.3
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 6.4e-43 178.7 283 53.4
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 6.4e-43 178.7 302 47.7
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 6.4e-43 178.7 302 47.7
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 1.9e-42 177.2 285 39.6
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 4.1e-42 176.0 286 39.9
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 7.1e-42 175.3 282 35.8
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 9.2e-42 174.9 282 40.4
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 1.6e-41 174.1 281 37.4
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 2.3e-40 170.2 301 37.2
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 2.3e-40 170.2 275 40.0
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 3.0e-40 169.9 333 36.9
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 3.9e-40 169.5 282 39.0
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 1.5e-39 167.5 314 36.6
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 5.6e-39 165.6 311 37.0
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 5.6e-39 165.6 330 35.5
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 6.2e-38 162.2 311 36.7
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.8e-37 160.6 282 37.2
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.8e-37 160.6 271 38.7
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 6.4e-35 152.1 214 44.4
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 8.4e-35 151.8 167 50.3
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.7e-33 146.7 352 34.7
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 9.6e-31 138.3 283 33.9
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 3.6e-30 136.3 329 31.3
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 3.4e-28 129.8 231 39.4
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 3.8e-27 126.3 248 35.1
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.9e-27 125.9 231 38.1
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 4.9e-27 125.9 283 42.4
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 6.4e-27 125.6 81 82.7
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 9.3e-26 121.7 213 38.5
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 9.3e-26 121.7 282 31.9
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.6e-25 120.9 141 48.9
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 6.0e-25 119.0 283 30.0
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 1.3e-24 117.9 252 34.1
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.7e-24 117.5 270 43.3
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 8.7e-24 115.2 247 35.6
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 2.5e-23 113.6 125 49.6
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 3.6e-22 109.8 238 32.8
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 4.8e-22 109.4 128 48.4
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 6.2e-22 109.0 142 47.9
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 1.8e-21 107.5 182 36.3
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 2.4e-21 107.1 235 30.6
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 1.2e-20 104.8 128 46.9
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 2.0e-20 104.0 131 44.3
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 2.6e-20 103.6 101 52.5
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 5.8e-20 102.4 106 48.1
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 9.9e-20 101.7 100 53.0
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 6.4e-19 99.0 172 39.5
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.9e-18 97.4 103 50.5
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.9e-18 97.4 169 37.9
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 5.4e-18 95.9 106 46.2
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.7e-17 93.6 288 36.8
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 1.8e-16 90.9 222 30.2
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 2.3e-16 90.5 96 46.9
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.5e-15 87.0 66 66.7
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 9.6e-15 85.1 269 27.9
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 3.7e-14 83.2 177 33.3
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 1.8e-13 80.9 81 55.6
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 2.0e-12 77.4 139 32.4
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 3.4e-12 76.6 103 44.7
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 2.7e-09 67.0 63 55.6
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.5e-09 66.6 50 62.0
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 1.0e-08 65.1 102 37.3
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 3.9e-08 63.2 167 30.5
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 2.5e-07 60.5 48 62.5
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 3.3e-07 60.1 82 47.6
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 1.6e-06 57.8 56 50.0
Duzib116G0864 Durio zibethinus HOM05D006511 ORTHO05D007567 3.7e-06 56.6 118 34.7
SMO137G0232 Selaginella moellendorffii HOM05D006511 ORTHO05D007567 3.7e-06 56.6 81 34.6


User provided reference genes

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