Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.6e-280 967.6 499 100.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.7e-149 531.2 477 63.7
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.3e-123 445.3 481 57.4
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 9.6e-39 165.6 485 32.8
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.3e-35 155.2 339 33.3
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.2e-34 150.6 339 33.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.1e-34 149.4 319 35.1
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.5e-33 147.1 484 30.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.5e-33 147.1 345 38.3
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.3e-32 144.4 337 33.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.0e-32 144.1 477 28.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 3.9e-32 143.7 487 29.4
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.5e-31 141.7 323 37.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.5e-31 141.0 348 35.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.3e-31 140.6 344 33.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.4e-31 139.4 331 40.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 9.6e-31 139.0 336 34.2
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.6e-30 138.3 338 34.9
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.1e-30 137.9 508 30.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.8e-30 136.7 345 38.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 6.2e-30 136.3 336 33.9
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.2e-30 136.3 328 36.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.1e-29 135.6 341 33.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.8e-29 134.8 341 32.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.2e-28 132.1 484 28.3
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.4e-28 130.6 476 29.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-27 128.6 474 28.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-27 128.6 486 30.0
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 3.8e-27 127.1 343 32.1
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.9e-27 126.7 343 32.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 6.5e-27 126.3 496 28.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.1e-26 125.6 498 27.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.9e-26 124.8 491 27.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 4.2e-26 123.6 349 30.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 7.1e-26 122.9 481 27.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.1e-26 122.9 370 31.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.3e-26 122.5 361 31.0
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.6e-25 121.7 479 31.5
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-25 121.3 319 33.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-25 121.3 319 33.5
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.7e-25 120.9 364 31.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.5e-25 120.6 351 35.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.3e-24 118.6 324 32.7
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.0e-24 117.5 360 36.1
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.0e-24 117.5 487 29.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.9e-24 117.1 365 30.7
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 6.7e-24 116.3 492 26.8
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 5.7e-23 113.2 348 31.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-22 111.7 343 30.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.7e-22 110.5 478 26.4
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.1e-21 109.0 337 32.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-20 105.5 252 31.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-20 105.5 252 31.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.6e-20 104.4 252 31.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.6e-20 104.4 359 28.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.6e-20 104.4 362 30.4
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.6e-20 104.4 335 30.1
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 3.4e-20 104.0 252 30.6
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 7.6e-20 102.8 344 30.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 7.6e-20 102.8 518 24.7
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.6e-20 102.8 509 26.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.0e-19 102.4 338 29.6
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.2e-19 101.3 249 30.9
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.0e-19 100.1 338 29.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 8.5e-19 99.4 353 31.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-18 98.6 337 28.5
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.5e-18 97.8 349 29.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.5e-18 97.8 344 28.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.2e-18 97.1 350 29.4
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-17 95.5 118 44.1
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 6.1e-17 93.2 324 30.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.8e-16 91.7 75 60.0
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.3e-16 91.3 135 42.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 3.0e-16 90.9 344 31.1
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 3.9e-16 90.5 90 51.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.1e-16 90.1 323 26.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.7e-16 89.4 348 32.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.7e-16 89.4 351 31.9
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.5e-15 88.6 356 28.4
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.3e-15 87.4 73 53.4
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 5.7e-15 86.7 116 44.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.7e-15 86.7 133 41.4
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.4e-15 86.3 478 24.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.4e-15 86.3 341 29.3
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 9.7e-15 85.9 322 29.5
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.6e-14 85.1 130 36.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.2e-14 84.7 322 31.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-14 84.3 127 37.8
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.8e-14 84.3 108 42.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.8e-14 84.3 127 37.8
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-14 84.0 117 41.9
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-14 84.0 117 41.9
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.7e-14 84.0 82 53.7
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 4.8e-14 83.6 323 26.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 4.8e-14 83.6 111 42.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 4.8e-14 83.6 156 37.2
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.2e-14 82.8 327 29.4
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-13 82.4 108 42.6
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-13 82.4 363 28.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.4e-13 82.0 261 31.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.4e-13 82.0 113 44.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.4e-13 82.0 66 53.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-13 81.6 117 40.2
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-13 81.6 117 40.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.8e-13 81.6 121 38.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.8e-13 81.6 197 29.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.8e-13 81.6 123 37.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.1e-13 80.9 134 35.8
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.1e-13 80.5 125 38.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.1e-13 80.5 121 40.5
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.3e-13 80.1 99 37.4
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 6.9e-13 79.7 91 39.6
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 6.9e-13 79.7 73 54.8
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 9.0e-13 79.3 218 28.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 9.0e-13 79.3 218 28.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-12 79.0 373 24.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.2e-12 79.0 68 52.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.5e-12 78.6 194 31.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-12 78.6 368 25.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-12 78.6 337 25.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.0e-12 78.2 101 45.5
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.6e-12 77.8 70 57.1
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.6e-12 77.8 70 57.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.6e-12 77.8 181 30.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.4e-12 77.4 205 28.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.4e-12 77.4 102 45.1
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.5e-12 77.0 135 34.8
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 7.7e-12 76.3 115 35.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-11 75.5 129 38.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.3e-11 75.5 106 41.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-11 74.7 118 39.0
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.9e-11 74.3 233 30.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.5e-11 73.2 223 30.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.5e-11 73.2 75 42.7
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 6.5e-11 73.2 103 42.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.5e-11 72.8 91 40.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.1e-10 72.4 143 36.4
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-10 71.6 87 40.2
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.2e-10 70.9 76 51.3
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 5.5e-10 70.1 129 34.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 9.4e-10 69.3 125 38.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.4e-10 69.3 161 31.7
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-09 68.6 160 31.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-09 68.2 145 35.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-09 68.2 145 35.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.1e-09 68.2 145 35.2
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.1e-09 68.2 348 25.9
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-09 68.2 188 31.4
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.6e-09 67.4 105 34.3
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 6.1e-09 66.6 107 36.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 6.1e-09 66.6 260 27.3
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 7.9e-09 66.2 118 34.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 7.9e-09 66.2 123 35.8
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.4e-08 65.5 122 35.2
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.9e-08 63.9 197 31.0
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 8.8e-08 62.8 152 32.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.5e-07 62.0 100 38.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.5e-07 62.0 190 31.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.3e-07 60.8 195 32.3
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-06 58.9 95 41.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.7e-06 58.5 39 71.8


User provided reference genes

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