Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008079.2 Cucumis melo HOM05D007440 ORTHO05D009418 4.4e-236 820.8 400 100.0
CsaV3_2G033090 Cucumis sativus L. HOM05D007440 ORTHO05D009418 9.2e-226 786.6 398 95.7
ClCG11G008830 Citrullus lanatus HOM05D007440 ORTHO05D009418 1.2e-222 776.2 400 93.2
Sed0012539 Sechium edule HOM05D007440 ORTHO05D009418 1.9e-207 725.7 398 86.4
CiPaw.03G017000 Carya illinoinensis HOM05D007440 ORTHO05D009418 8.7e-184 647.1 396 75.8
QL09p004054 Quercus lobata HOM05D007440 ORTHO05D009418 1.1e-178 630.2 388 75.5
Dinv41796 Davidia involucrata HOM05D007440 ORTHO05D009418 2.7e-177 625.5 395 76.2
GSVIVG01036437001 Vitis vinifera HOM05D007440 ORTHO05D009418 2.7e-177 625.5 392 75.8
Cfa008111 Carpinus fangiana HOM05D007440 ORTHO05D009418 4.6e-177 624.8 396 73.5
Manes.18G121350 Manihot esculenta HOM05D007440 ORTHO05D009418 1.0e-176 623.6 391 75.2
Thecc.08G172800 Theobroma cacao HOM05D007440 ORTHO05D009418 3.9e-176 621.7 392 75.3
TAR381G0685 Trochodendron aralioides HOM05D007440 ORTHO05D009418 2.2e-174 615.9 400 72.8
FAN18G0056 Fragaria x ananassa HOM05D007440 ORTHO05D009418 8.2e-174 614.0 396 71.7
Atru.chr12.1704 Acer truncatum HOM05D007440 ORTHO05D009418 6.9e-173 610.9 392 75.5
RcHm_v2.0_Chr7g0224381 Rosa chinensis HOM05D007440 ORTHO05D009418 9.0e-173 610.5 399 72.4
Hma1.2p1_0708F.1_g207100 Hydrangea macrophylla HOM05D007440 ORTHO05D009418 4.5e-172 608.2 390 74.1
Nn1g02997 Nelumbo nucifera HOM05D007440 ORTHO05D009418 7.7e-172 607.4 391 74.2
Potri.019G076200 Populus trichocarpa HOM05D007440 ORTHO05D009418 4.2e-170 601.7 394 73.4
Cpa.g.sc21.56 Carica papaya HOM05D007440 ORTHO05D009418 2.1e-169 599.4 392 73.0
CSS0017361 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.0e-168 597.0 397 72.3
TWI23G1187 Tripterygium wilfordii HOM05D007440 ORTHO05D009418 1.4e-168 596.7 390 73.6
PGR031G3126 Punica granatum HOM05D007440 ORTHO05D009418 5.1e-168 594.7 392 72.7
Lj9C701T14 Lonicera japonica HOM05D007440 ORTHO05D009418 5.7e-167 591.3 382 74.9
Actinidia29398 Actinidia chinensis HOM05D007440 ORTHO05D009418 7.4e-167 590.9 390 72.3
CANSAT25G0816 Cannabis sativa HOM05D007440 ORTHO05D009418 2.8e-166 589.0 386 72.0
Haze_13927 Corylus avellana HOM05D007440 ORTHO05D009418 2.8e-166 589.0 396 70.5
Gorai.009G265700 Gossypium raimondii HOM05D007440 ORTHO05D009418 1.5e-164 583.2 387 72.9
MD15G1399400 Malus domestica HOM05D007440 ORTHO05D009418 2.0e-164 582.8 396 69.2
Gohir.D05G254100 Gossypium hirsutum HOM05D007440 ORTHO05D009418 2.6e-164 582.4 387 72.6
Sabra19G0086600 Salix brachista HOM05D007440 ORTHO05D009418 1.7e-163 579.7 402 70.9
Gohir.A05G252301 Gossypium hirsutum HOM05D007440 ORTHO05D009418 1.1e-162 577.0 389 71.5
Oeu061891.1 Olea europaea HOM05D007440 ORTHO05D009418 3.6e-161 572.0 403 68.7
Lj3g0019924 Lotus japonicus HOM05D007440 ORTHO05D009418 6.1e-161 571.2 394 70.8
Solyc12g017690.3 Solanum lycopersicum HOM05D007440 ORTHO05D009418 5.1e-160 568.2 393 70.7
arahy.Tifrunner.gnm1.ann1.E07HZ8 Arachis hypogaea HOM05D007440 ORTHO05D009418 7.4e-159 564.3 393 70.5
arahy.Tifrunner.gnm1.ann1.YQ4984 Arachis hypogaea HOM05D007440 ORTHO05D009418 9.7e-159 563.9 393 70.5
Glyma.13G000800 Glycine max HOM05D007440 ORTHO05D009418 9.7e-159 563.9 391 70.1
Cc03_g16220 Coffea canephora HOM05D007440 ORTHO05D009418 1.3e-158 563.5 392 68.9
Sopen12g008470 Solanum pennellii HOM05D007440 ORTHO05D009418 2.2e-158 562.8 393 69.5
Lsat_1_v5_gn_1_25281 Lactuca sativa HOM05D007440 ORTHO05D009418 3.7e-158 562.0 412 67.7
Rhsim02G0174300 Rhododendron simsii HOM05D007440 ORTHO05D009418 4.8e-158 561.6 401 68.8
Ciclev10024582m.g Citrus clementina HOM05D007440 ORTHO05D009418 6.3e-158 561.2 390 71.0
Phvul.011G216600 Phaseolus vulgaris HOM05D007440 ORTHO05D009418 2.4e-157 559.3 390 70.3
Aqoxy6G00075 Aquilegia oxysepala HOM05D007440 ORTHO05D009418 4.1e-157 558.5 411 67.4
PSO170G3813 Papaver somniferum HOM05D007440 ORTHO05D009418 7.0e-157 557.8 396 67.4
Migut.N03008 Erythranthe guttata HOM05D007440 ORTHO05D009418 5.0e-155 551.6 393 67.4
FvH4_5g32910 Fragaria vesca HOM05D007440 ORTHO05D009418 8.5e-155 550.8 359 71.0
CDE05G2917 Ceratophyllum demersum HOM05D007440 ORTHO05D009418 4.0e-152 542.0 392 67.3
Prupe.1G546900 Prunus persica HOM05D007440 ORTHO05D009418 6.7e-152 541.2 354 72.0
SalBow6G1672 Salvia bowleyana HOM05D007440 ORTHO05D009418 1.5e-151 540.0 402 65.7
Psat7g227720 Pisum sativum HOM05D007440 ORTHO05D009418 2.0e-151 539.7 387 68.0
TPR.G34135 Trifolium pratense HOM05D007440 ORTHO05D009418 2.6e-151 539.3 386 67.6
FAN04G2515 Fragaria x ananassa HOM05D007440 ORTHO05D009418 3.3e-151 538.9 399 65.9
Hund26630 Selenicereus undatus HOM05D007440 ORTHO05D009418 1.3e-150 537.0 389 67.1
HanXRQChr02g0037061 Helianthus annuus HOM05D007440 ORTHO05D009418 4.1e-149 531.9 395 67.3
Medtr4g031180 Medicago truncatula HOM05D007440 ORTHO05D009418 1.6e-148 530.0 385 67.3
ATR1089G110 Amborella trichopoda HOM05D007440 ORTHO05D009418 2.7e-145 519.2 392 65.6
HPP92_004660 Vanilla planifolia HOM05D007440 ORTHO05D009418 5.7e-143 511.5 398 63.3
RcHm_v2.0_Chr7g0230881 Rosa chinensis HOM05D007440 ORTHO05D009418 1.4e-141 506.9 332 70.2
SGA_v2.0_scaffold19G08914 Striga asiatica HOM05D007440 ORTHO05D009418 6.5e-139 498.0 490 55.1
THA.LOC104810378 Tarenaya hassleriana HOM05D007440 ORTHO05D009418 1.1e-138 497.3 386 61.7
Aa31LG4G9050 Aethionema arabicum HOM05D007440 ORTHO05D009418 1.5e-138 496.9 385 63.9
Os10g0141900 Oryza sativa ssp. japonica HOM05D007440 ORTHO05D009418 9.4e-138 494.2 393 61.3
Lalb_Chr17g0336871 Lupinus albus HOM05D007440 ORTHO05D009418 2.1e-137 493.0 397 64.7
Ca_12759_v3 Cicer arietinum L. HOM05D007440 ORTHO05D009418 5.4e-133 478.4 388 61.1
Eucgr.H00023 Eucalyptus grandis HOM05D007440 ORTHO05D009418 1.3e-131 473.8 308 70.1
ECA247G2087 Erigeron canadensis HOM05D007440 ORTHO05D009418 2.5e-130 469.5 323 68.1
FAN08G1847 Fragaria x ananassa HOM05D007440 ORTHO05D009418 5.0e-123 445.3 346 61.3
MBI03_g14514_MAGBIO Magnolia biondii HOM05D007440 ORTHO05D009418 9.5e-122 441.0 341 64.2
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 9.2e-109 397.9 330 59.7
Mapoly0046s0064 Marchantia polymorpha HOM05D007440 ORTHO05D009418 3.3e-106 389.4 395 49.4
Duzib177G0102 Durio zibethinus HOM05D007440 ORTHO05D009418 2.8e-105 386.3 233 77.3
Zm00001eb026400 Zea mays HOM05D007440 ORTHO05D009418 3.6e-105 386.0 306 61.1
Pp3c17_10270 Physcomitrium patens HOM05D007440 ORTHO05D009418 4.7e-105 385.6 395 49.4
SMO347G0497 Selaginella moellendorffii HOM05D007440 ORTHO05D009418 9.9e-103 377.9 374 50.3
Nitab4.5_0006566g0010 Nicotiana tabacum HOM05D007440 ORTHO05D009418 7.8e-100 368.2 327 57.8
PSO782G5381 Papaver somniferum HOM05D007440 ORTHO05D009418 9.6e-98 361.3 250 68.4
Pp3c9_24070 Physcomitrium patens HOM05D007440 ORTHO05D009418 1.1e-90 337.8 399 44.9
CBR_g29696 Chara braunii HOM05D007440 ORTHO05D009418 1.1e-82 311.2 471 38.6
Nitab4.5_0000219g0060 Nicotiana tabacum HOM05D007440 ORTHO05D009418 1.1e-82 311.2 214 71.0
Lsat_1_v5_gn_7_9441 Lactuca sativa HOM05D007440 ORTHO05D009418 1.4e-80 304.3 267 58.4
Peaxi162Scf00017g00002 Petunia axillaris HOM05D007440 ORTHO05D009418 2.3e-75 287.0 262 55.7
COL.COLO4_24615 Corchorus olitorius HOM05D007440 ORTHO05D009418 7.4e-74 282.0 181 72.9
CSS0010463 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 9.0e-72 275.0 181 71.8
AagrBONN_evm.TU.Sc2ySwM_362.1381 Anthoceros agrestis HOM05D007440 ORTHO05D009418 1.5e-71 274.2 266 49.2
PGSC0003DMG401002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 4.6e-68 262.7 178 69.7
vmacro11039 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 8.7e-67 258.5 222 59.9
PGSC0003DMG402002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 2.4e-64 250.4 171 71.9
Nitab4.5_0000219g0040 Nicotiana tabacum HOM05D007440 ORTHO05D009418 3.1e-64 250.0 180 66.1
Atru.chr13.2417 Acer truncatum HOM05D007440 ORTHO05D009418 1.7e-62 244.2 161 73.9
vmacro11038 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 1.6e-60 237.7 211 58.8
PRCOL_00006364 Prasinoderma coloniale HOM05D007440 ORTHO05D009418 8.2e-57 225.3 383 35.2
Cre10.g451000 Chlamydomonas reinhardtii HOM05D007440 ORTHO05D009418 2.5e-53 213.8 457 33.5
CSS0018984 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 2.3e-51 207.2 178 61.2
CAN.G8.41 Capsicum annuum HOM05D007440 ORTHO05D009418 5.1e-51 206.1 210 51.0
MCO13G519 Micromonas commoda HOM05D007440 ORTHO05D009418 6.9e-48 195.7 413 31.5
CAN.G8.40 Capsicum annuum HOM05D007440 ORTHO05D009418 6.7e-35 152.5 111 62.2
Thecc.09G136000 Theobroma cacao HOM05D007440 ORTHO05D009418 4.4e-34 149.8 96 77.1
Pp3c2_7910 Physcomitrium patens HOM05D006997 ORTHO05D008713 1.7e-30 137.9 395 28.6
Actinidia30795 Actinidia chinensis HOM05D006997 ORTHO05D008713 3.8e-30 136.7 386 28.5
PSO170G4713 Papaver somniferum HOM05D006997 ORTHO05D008713 3.8e-30 136.7 396 28.5
MD08G1188600 Malus domestica HOM05D006997 ORTHO05D008713 6.5e-30 136.0 385 27.8
PSO700G0253 Papaver somniferum HOM05D006997 ORTHO05D008713 1.5e-29 134.8 363 28.7
FvH4_5g36560 Fragaria vesca HOM05D006997 ORTHO05D008713 2.5e-29 134.0 395 28.6
Mapoly0028s0040 Marchantia polymorpha HOM05D006997 ORTHO05D008713 2.5e-29 134.0 377 26.5
Gohir.A01G132700 Gossypium hirsutum HOM05D006997 ORTHO05D008713 3.2e-29 133.7 366 27.6
MBI02_g10710_MAGBIO Magnolia biondii HOM05D006997 ORTHO05D008713 3.2e-29 133.7 386 28.0
Potri.002G100700 Populus trichocarpa HOM05D006997 ORTHO05D008713 4.2e-29 133.3 385 28.3
Actinidia10345 Actinidia chinensis HOM05D006997 ORTHO05D008713 5.5e-29 132.9 384 28.1
Prupe.1G523100 Prunus persica HOM05D006997 ORTHO05D008713 5.5e-29 132.9 384 28.4
arahy.Tifrunner.gnm1.ann1.2V06JV Arachis hypogaea HOM05D006997 ORTHO05D008713 7.2e-29 132.5 384 28.1
Gorai.002G141200 Gossypium raimondii HOM05D006997 ORTHO05D008713 7.2e-29 132.5 385 28.1
FAN13G2131 Fragaria x ananassa HOM05D006997 ORTHO05D008713 9.4e-29 132.1 400 27.8
VMungo1309G1562 Vigna mungo HOM05D006997 ORTHO05D008713 9.4e-29 132.1 385 27.8
TAR381G0945 Trochodendron aralioides HOM05D006997 ORTHO05D008713 1.2e-28 131.7 385 28.3
Atru.chr13.1117 Acer truncatum HOM05D006997 ORTHO05D008713 1.6e-28 131.3 338 29.0
Duzib116G0677 Durio zibethinus HOM05D006997 ORTHO05D008713 1.6e-28 131.3 385 27.8
Thecc.08G101800 Theobroma cacao HOM05D006997 ORTHO05D008713 1.6e-28 131.3 385 28.3
HPP92_005985 Vanilla planifolia HOM05D006997 ORTHO05D008713 1.6e-28 131.3 383 28.5
CsaV3_3G047700 Cucumis sativus L. HOM05D006997 ORTHO05D008713 2.1e-28 131.0 394 27.7
Migut.O00787 Erythranthe guttata HOM05D006997 ORTHO05D008713 2.1e-28 131.0 385 27.8
PSO447G0258 Papaver somniferum HOM05D006997 ORTHO05D008713 2.1e-28 131.0 396 27.8
RcHm_v2.0_Chr3g0492071 Rosa chinensis HOM05D006997 ORTHO05D008713 2.1e-28 131.0 384 28.1
arahy.Tifrunner.gnm1.ann1.50RG73 Arachis hypogaea HOM05D006997 ORTHO05D008713 2.7e-28 130.6 384 27.9
Duzib093G0368 Durio zibethinus HOM05D006997 ORTHO05D008713 2.7e-28 130.6 329 28.3
FAN18G0565 Fragaria x ananassa HOM05D006997 ORTHO05D008713 2.7e-28 130.6 392 28.6
Lalb_Chr08g0242211 Lupinus albus HOM05D006997 ORTHO05D008713 2.7e-28 130.6 397 27.2
Manes.02G149000 Manihot esculenta HOM05D006997 ORTHO05D008713 2.7e-28 130.6 385 28.1
CANSAT54G2489 Cannabis sativa HOM05D006997 ORTHO05D008713 3.6e-28 130.2 384 28.1
Ciclev10001423m.g Citrus clementina HOM05D006997 ORTHO05D008713 3.6e-28 130.2 385 28.1
Glyma.04G099000 Glycine max HOM05D006997 ORTHO05D008713 3.6e-28 130.2 385 27.5
PGR042G3947 Punica granatum HOM05D006997 ORTHO05D008713 3.6e-28 130.2 385 27.5
MELO3C003553.2 Cucumis melo HOM05D006997 ORTHO05D008713 6.1e-28 129.4 383 28.2
Lj1g0014637 Lotus japonicus HOM05D006997 ORTHO05D008713 8.0e-28 129.0 385 27.0
FAN08G2563 Fragaria x ananassa HOM05D006997 ORTHO05D008713 1.0e-27 128.6 359 28.1
Nn5g29994 Nelumbo nucifera HOM05D006997 ORTHO05D008713 1.0e-27 128.6 329 28.6
TPR.G18644 Trifolium pratense HOM05D006997 ORTHO05D008713 1.0e-27 128.6 394 27.2
Eucgr.F00379 Eucalyptus grandis HOM05D006997 ORTHO05D008713 2.3e-27 127.5 359 28.1
Glyma.06G100700 Glycine max HOM05D006997 ORTHO05D008713 2.3e-27 127.5 385 27.0
CiPaw.15G045900 Carya illinoinensis HOM05D006997 ORTHO05D008713 3.0e-27 127.1 378 28.0
TWI56G0051 Tripterygium wilfordii HOM05D006997 ORTHO05D008713 3.0e-27 127.1 384 27.9
Cre12.g558400 Chlamydomonas reinhardtii HOM05D006997 ORTHO05D008713 4.0e-27 126.7 391 26.1
CSS0033006 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 6.8e-27 125.9 329 28.6
Cc10_g06680 Coffea canephora HOM05D006997 ORTHO05D008713 6.8e-27 125.9 384 27.6
Haze_18264 Corylus avellana HOM05D006997 ORTHO05D008713 6.8e-27 125.9 378 27.8
Hma1.2p1_1613F.1_g293656 Hydrangea macrophylla HOM05D006997 ORTHO05D008713 8.8e-27 125.6 378 27.5
QL02p002364 Quercus lobata HOM05D006997 ORTHO05D008713 1.5e-26 124.8 383 27.4
Cpa.g.sc36.182 Carica papaya HOM05D006997 ORTHO05D008713 2.6e-26 124.0 289 29.4
Medtr5g099370 Medicago truncatula HOM05D006997 ORTHO05D008713 3.4e-26 123.6 385 26.8
ATR0684G208 Amborella trichopoda HOM05D006997 ORTHO05D008713 7.5e-26 122.5 360 27.8
GSVIVG01009084001 Vitis vinifera HOM05D006997 ORTHO05D008713 7.5e-26 122.5 385 27.0
Nitab4.5_0005108g0030 Nicotiana tabacum HOM05D006997 ORTHO05D008713 9.8e-26 122.1 334 28.1
THA.LOC104806793 Tarenaya hassleriana HOM05D006997 ORTHO05D008713 3.7e-25 120.2 312 27.9
Migut.N02878 Erythranthe guttata HOM05D006997 ORTHO05D008713 4.8e-25 119.8 360 27.8
CSS0036565 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 8.3e-25 119.0 289 29.1
SalBow1G8133 Salvia bowleyana HOM05D006997 ORTHO05D008713 8.3e-25 119.0 378 26.5
Psat2g000280 Pisum sativum HOM05D006997 ORTHO05D008713 1.1e-24 118.6 282 29.1
SMO203G0247 Selaginella moellendorffii HOM05D006997 ORTHO05D008713 1.1e-24 118.6 327 26.9
Hund26989 Selenicereus undatus HOM05D006997 ORTHO05D008713 1.8e-24 117.9 263 29.3
Lj4C96G9 Lonicera japonica HOM05D006997 ORTHO05D008713 3.1e-24 117.1 362 27.3
AagrBONN_evm.TU.Sc2ySwM_228.3329 Anthoceros agrestis HOM05D006997 ORTHO05D008713 9.1e-24 115.5 370 25.9
Glyma.08G367700 Glycine max HOM05D007440 ORTHO05D009418 9.1e-24 115.5 73 72.6
COL.COLO4_12006 Corchorus olitorius HOM05D006997 ORTHO05D008713 4.5e-23 113.2 243 30.5
Gohir.D01G115600 Gossypium hirsutum HOM05D006997 ORTHO05D008713 4.5e-23 113.2 243 30.0
vmacro21291 Vaccinium macrocarpon HOM05D006997 ORTHO05D008713 5.9e-23 112.8 256 29.3
ClCG11G014320 Citrullus lanatus HOM05D006997 ORTHO05D008713 1.0e-22 112.1 383 26.9
Rhsim06G0078000 Rhododendron simsii HOM05D006997 ORTHO05D008713 1.3e-22 111.7 330 27.6
Atru.chr13.2418 Acer truncatum HOM05D007440 ORTHO05D009418 2.2e-22 110.9 165 44.2
Thecc.02G308000 Theobroma cacao HOM05D007440 ORTHO05D009418 2.2e-22 110.9 76 72.4
arahy.Tifrunner.gnm1.ann1.M6BDRX Arachis hypogaea HOM05D006997 ORTHO05D008713 2.9e-22 110.5 394 26.4
Aqoxy5G01920 Aquilegia oxysepala HOM05D006997 ORTHO05D008713 9.5e-21 105.5 340 26.8
Ca_20316_v3 Cicer arietinum L. HOM05D006997 ORTHO05D008713 2.8e-20 104.0 328 26.5
SEGI_15929 Sequoiadendron giganteum HOM05D007440 ORTHO05D009418 2.8e-20 104.0 67 68.7
arahy.Tifrunner.gnm1.ann1.I3UG1J Arachis hypogaea HOM05D006997 ORTHO05D008713 1.4e-19 101.7 375 25.6
DCAR_012882 Daucus carota HOM05D006997 ORTHO05D008713 1.2e-18 98.6 261 27.2
ECA247G2990 Erigeron canadensis HOM05D007440 ORTHO05D009418 3.4e-18 97.1 105 49.5
Dinv07073 Davidia involucrata HOM05D006997 ORTHO05D008713 3.1e-16 90.5 260 28.8
SGA_v2.0_scaffold28G11904 Striga asiatica HOM05D006997 ORTHO05D008713 2.0e-15 87.8 195 29.7
MD15G1376400 Malus domestica HOM05D006997 ORTHO05D008713 5.0e-14 83.2 203 29.1
CBR_g19661 Chara braunii HOM05D006997 ORTHO05D008713 1.2e-12 78.6 292 24.7


User provided reference genes

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