Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 6.7e-23 110.9 96 100.0
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.7e-21 106.3 96 97.9
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 8.8e-15 84.0 48 77.1
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 8.8e-15 84.0 48 77.1
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 8.8e-15 84.0 48 77.1
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.0e-14 82.8 48 75.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.6e-14 82.4 48 81.2
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 2.6e-14 82.4 48 77.1
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 3.4e-14 82.0 47 78.7
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 4.4e-14 81.6 48 83.3
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.7e-14 81.3 48 77.1
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 5.7e-14 81.3 48 77.1
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-13 79.3 48 75.0
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-13 79.3 48 75.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.2e-13 79.3 48 75.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.7e-13 78.6 48 72.9
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 8.3e-13 77.4 48 70.8
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.1e-12 77.0 48 75.0
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.4e-12 75.9 48 70.8
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 5.4e-12 74.7 48 70.8
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 5.4e-12 74.7 48 70.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.0e-12 74.3 48 68.8
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.0e-12 74.3 48 68.8
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.0e-12 74.3 48 68.8
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 9.1e-12 73.9 44 77.3
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.1e-12 73.9 48 68.8
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 1.2e-11 73.6 48 70.8
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.2e-11 73.6 48 72.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.0e-11 72.8 47 70.2
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.0e-11 72.8 48 72.9
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 2.0e-11 72.8 47 72.3
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.7e-11 72.4 48 66.7
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.5e-11 71.6 48 64.6
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 7.7e-11 70.9 46 67.4
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 7.7e-11 70.9 48 66.7
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.3e-10 70.1 49 69.4
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 3.8e-10 68.6 48 68.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.0e-10 68.2 48 62.5
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.6e-10 67.8 48 62.5
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.6e-10 67.8 48 62.5
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 6.6e-10 67.8 48 62.5
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 6.6e-10 67.8 47 68.1
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 6.6e-10 67.8 48 64.6
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.5e-09 66.6 47 66.0
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.5e-09 66.6 43 65.1
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 7.2e-09 64.3 51 58.8
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 7.2e-09 64.3 51 58.8
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 7.2e-09 64.3 48 64.6
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-08 63.5 41 68.3
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-08 63.5 41 68.3
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.2e-08 63.5 41 68.3
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.6e-08 63.2 36 72.2
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-08 62.8 41 65.9
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.1e-08 62.8 41 65.9
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.1e-08 62.8 32 81.2
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.1e-08 62.8 46 60.9
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.1e-08 62.8 41 65.9
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-08 62.4 41 65.9
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 4.7e-08 61.6 41 65.9
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 4.7e-08 61.6 41 65.9
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 4.7e-08 61.6 47 61.7
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 6.1e-08 61.2 39 66.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 6.1e-08 61.2 39 66.7
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 6.1e-08 61.2 39 66.7
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 6.1e-08 61.2 39 66.7
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 6.1e-08 61.2 34 73.5
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.4e-07 60.1 41 61.0
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 5.2e-07 58.2 41 63.4
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 5.2e-07 58.2 41 63.4
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 5.2e-07 58.2 41 63.4
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 5.2e-07 58.2 34 67.6
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.2e-07 58.2 28 82.1
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 6.8e-07 57.8 51 52.9
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 6.8e-07 57.8 51 52.9
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 6.8e-07 57.8 44 61.4
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-07 57.4 48 54.2
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.5e-06 56.6 49 61.2
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.5e-06 56.6 46 56.5
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.0e-06 56.2 45 55.6
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-06 56.2 43 58.1
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.0e-06 56.2 46 52.2
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.4e-06 55.5 34 64.7
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 3.4e-06 55.5 45 57.8
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 4.4e-06 55.1 49 59.2
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.7e-06 54.7 43 55.8
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 7.5e-06 54.3 43 58.1
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 7.5e-06 54.3 27 81.5
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 9.8e-06 53.9 40 52.5


User provided reference genes

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