Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 4.7e-103 377.9 191 100.0
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 8.1e-95 350.5 193 92.2
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 8.4e-84 313.9 163 96.3
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 9.6e-80 300.4 179 83.8
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 9.6e-80 300.4 190 80.0
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 4.7e-79 298.1 197 78.2
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 6.2e-79 297.7 189 79.9
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 8.1e-79 297.4 190 79.5
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.1e-79 297.4 190 79.5
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.4e-78 295.8 192 79.2
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.0e-78 295.0 190 78.4
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.0e-78 295.0 190 78.9
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 4.0e-78 295.0 176 81.8
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 6.9e-78 294.3 190 78.4
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.2e-77 293.5 191 78.0
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 3.4e-77 292.0 176 82.4
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 3.4e-77 292.0 195 76.9
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 4.4e-77 291.6 190 77.4
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 9.9e-77 290.4 189 76.7
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 1.3e-76 290.0 176 81.2
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.7e-76 289.7 192 76.6
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 4.9e-76 288.1 191 77.0
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 4.9e-76 288.1 190 78.4
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 6.4e-76 287.7 193 78.8
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 8.4e-76 287.3 195 76.4
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.4e-75 286.6 192 76.6
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 3.2e-75 285.4 190 77.4
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 4.2e-75 285.0 190 77.4
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 4.2e-75 285.0 190 77.4
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 5.4e-75 284.6 191 75.4
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 7.1e-75 284.3 194 76.3
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 7.1e-75 284.3 194 76.3
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 9.3e-75 283.9 178 80.9
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 1.6e-74 283.1 183 78.1
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 6.0e-74 281.2 179 78.2
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 6.0e-74 281.2 189 73.5
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.0e-73 280.4 193 76.2
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.0e-73 280.4 179 78.8
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 1.3e-73 280.0 183 77.6
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.7e-73 279.6 178 79.8
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 1.7e-73 279.6 178 79.8
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 2.3e-73 279.3 176 79.0
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 2.3e-73 279.3 176 79.0
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 2.3e-73 279.3 176 79.0
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 3.0e-73 278.9 194 74.7
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 3.9e-73 278.5 180 76.7
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 8.7e-73 277.3 179 77.7
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 1.9e-72 276.2 182 76.9
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.9e-72 276.2 193 75.1
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 3.3e-72 275.4 196 75.0
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 3.3e-72 275.4 182 75.3
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 7.3e-72 274.2 181 79.6
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 9.6e-72 273.9 193 74.1
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 1.3e-71 273.5 193 74.1
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.8e-71 272.3 202 71.3
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 3.6e-71 271.9 190 72.1
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 3.6e-71 271.9 189 71.4
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 8.1e-71 270.8 197 71.6
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 1.1e-70 270.4 195 72.3
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 2.4e-70 269.2 177 76.3
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.4e-70 269.2 183 76.0
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 3.1e-70 268.9 194 73.7
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 5.3e-70 268.1 192 73.4
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 5.3e-70 268.1 187 70.6
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 6.9e-70 267.7 168 77.4
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.2e-69 266.9 189 73.0
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.2e-69 266.9 179 74.3
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 5.8e-69 264.6 179 73.7
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.9e-67 259.6 203 67.0
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 1.9e-67 259.6 192 68.2
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.4e-67 259.2 177 72.9
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 9.3e-67 257.3 200 71.5
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 9.3e-67 257.3 200 71.5
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 9.3e-67 257.3 200 71.5
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 2.1e-66 256.1 178 74.2
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 3.5e-66 255.4 200 71.0
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 7.9e-66 254.2 199 69.8
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.0e-65 253.8 203 69.0
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.3e-65 253.4 203 66.5
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.8e-65 253.1 177 72.3
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 2.3e-65 252.7 199 69.3
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 3.0e-65 252.3 199 68.8
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 3.0e-65 252.3 174 73.0
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 6.7e-65 251.1 199 68.8
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 8.7e-65 250.8 202 67.8
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 8.7e-65 250.8 202 67.8
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 8.7e-65 250.8 192 69.3
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 1.1e-64 250.4 180 67.2
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.3e-64 248.4 184 69.0
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.3e-64 248.4 184 69.0
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 1.6e-63 246.5 201 67.7
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 2.8e-63 245.7 191 64.4
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 6.2e-63 244.6 202 66.8
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 7.6e-61 237.7 181 69.6
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.6e-61 237.7 184 64.1
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.6e-58 229.9 149 75.8
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 5.6e-56 221.5 151 73.5
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.2e-53 213.8 159 67.3
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 3.3e-48 195.7 194 58.8
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 8.2e-47 191.0 176 54.5
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 6.5e-44 181.4 141 65.2
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 3.0e-41 172.6 182 47.8
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 4.3e-40 168.7 177 49.7
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 5.7e-40 168.3 110 73.6
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.3e-39 167.2 184 51.1
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 6.3e-39 164.9 110 72.7
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.4e-38 163.7 175 46.9
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 2.7e-34 149.4 99 73.7
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.7e-32 141.0 180 46.1
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 2.2e-28 129.8 121 52.9
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.7e-23 113.6 131 49.6
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 2.7e-18 96.3 67 67.2
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.5e-12 74.7 69 56.5
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 4.2e-11 72.4 45 73.3
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 1.2e-10 70.9 56 71.4
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.1e-06 54.7 33 72.7


User provided reference genes

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