Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 8.6e-190 666.8 323 100.0
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 4.3e-181 637.9 323 94.7
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 5.0e-121 438.3 312 67.3
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 1.5e-117 426.8 310 64.8
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 1.7e-116 423.3 330 62.1
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 1.4e-115 420.2 322 64.3
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 1.8e-115 419.9 310 63.9
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 6.9e-115 417.9 311 65.9
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 6.9e-115 417.9 221 89.6
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 1.2e-114 417.2 322 64.0
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 2.2e-113 412.9 326 62.6
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 6.5e-113 411.4 349 63.9
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 8.5e-113 411.0 321 62.3
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 1.1e-112 410.6 317 62.8
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 2.5e-112 409.5 313 66.5
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 2.5e-112 409.5 313 62.9
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 3.2e-112 409.1 319 64.6
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 1.2e-111 407.1 320 63.8
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 2.7e-111 406.0 312 63.1
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 1.4e-110 403.7 314 65.6
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 1.8e-110 403.3 321 61.7
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 3.0e-110 402.5 318 62.3
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 3.9e-110 402.1 321 63.2
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 6.7e-110 401.4 322 63.7
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 8.8e-110 401.0 320 62.5
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 1.1e-109 400.6 315 63.2
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.0e-109 399.8 317 61.2
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 3.3e-109 399.1 318 61.9
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 5.7e-109 398.3 314 59.9
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 5.7e-109 398.3 317 61.2
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 9.7e-109 397.5 317 61.2
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.2e-108 396.4 317 61.2
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 2.2e-108 396.4 317 60.9
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 3.7e-108 395.6 321 58.9
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 4.8e-108 395.2 326 61.0
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 1.1e-107 394.0 312 59.9
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 1.4e-107 393.7 309 60.8
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.4e-107 393.7 319 59.9
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 2.4e-107 392.9 313 63.3
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 4.1e-107 392.1 317 59.6
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 2.0e-106 389.8 378 54.5
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 5.9e-106 388.3 309 60.5
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 7.7e-106 387.9 309 60.8
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 5.0e-105 385.2 328 58.8
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 5.0e-105 385.2 320 58.8
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 8.5e-105 384.4 323 60.1
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.5e-104 383.6 320 59.4
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.5e-104 383.6 319 58.6
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 1.9e-104 383.3 309 59.9
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 1.9e-104 383.3 309 60.2
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 4.2e-104 382.1 357 56.9
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 7.2e-104 381.3 312 57.7
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 3.6e-103 379.0 307 59.0
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 8.0e-103 377.9 314 59.9
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 2.3e-102 376.3 290 62.4
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 7.5e-101 371.3 310 58.1
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 9.7e-101 370.9 311 58.2
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 9.7e-101 370.9 311 56.9
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 2.2e-100 369.8 313 59.4
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.1e-99 367.5 311 57.6
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 1.1e-99 367.5 311 58.2
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 1.8e-99 366.7 317 56.8
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 3.1e-99 365.9 309 57.9
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 3.1e-99 365.9 321 58.3
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 5.3e-99 365.2 311 56.9
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 2.7e-98 362.8 309 57.6
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.1e-96 357.5 325 55.1
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 7.2e-96 354.8 320 57.2
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 1.8e-94 350.1 241 67.6
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.8e-94 350.1 282 59.6
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 4.0e-94 349.0 340 52.4
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 5.2e-94 348.6 322 53.4
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 1.5e-93 347.1 298 61.1
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 4.4e-93 345.5 322 55.3
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 9.1e-91 337.8 399 44.1
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 2.0e-90 336.7 310 58.1
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 1.0e-89 334.3 309 54.4
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.7e-89 333.6 310 57.4
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 3.8e-89 332.4 311 54.0
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 8.0e-87 324.7 228 65.4
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 4.9e-84 315.5 288 55.6
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 4.9e-84 315.5 226 63.7
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 3.1e-83 312.8 221 63.3
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 2.6e-77 293.1 279 52.7
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 1.3e-76 290.8 197 68.5
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 1.8e-75 287.0 200 69.5
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 2.4e-75 286.6 393 42.2
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.2e-75 286.2 349 47.0
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 1.1e-72 277.7 311 46.0
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 3.1e-70 269.6 315 42.5
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 6.8e-70 268.5 337 46.9
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 2.9e-68 263.1 234 56.0
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 7.0e-67 258.5 304 43.8
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 9.2e-67 258.1 318 45.0
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 1.2e-61 241.1 235 53.6
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 1.0e-57 228.0 380 38.9
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 1.9e-56 223.8 175 64.6
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 5.8e-53 212.2 194 49.0
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 7.8e-50 201.8 171 57.9
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 7.8e-50 201.8 216 48.6
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 2.5e-48 196.8 203 52.2
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 9.6e-48 194.9 198 53.0
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 2.6e-45 186.8 117 70.1
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.3e-44 184.5 153 57.5
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.0e-41 174.9 182 53.8
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 5.1e-41 172.6 241 44.4
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 2.5e-40 170.2 103 74.8
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 5.6e-40 169.1 235 43.0
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 5.6e-40 169.1 235 43.0
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 1.8e-38 164.1 177 50.8
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 1.4e-35 154.5 222 42.8
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 1.6e-34 151.0 172 50.0
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 6.0e-34 149.1 207 39.6
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 1.1e-32 144.8 135 46.7
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 5.5e-27 125.9 89 64.0
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 3.3e-24 116.7 186 37.1
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 1.4e-22 111.3 85 61.2
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 2.7e-18 97.1 97 49.5
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 1.5e-16 91.3 145 39.3
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 1.2e-10 71.6 97 44.3
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 3.0e-09 67.0 144 34.0
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 6.7e-09 65.9 165 30.9
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 3.3e-08 63.5 240 23.3
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 9.7e-08 62.0 117 39.3
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 9.7e-08 62.0 165 32.1
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 1.3e-07 61.6 144 31.2
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 1.7e-07 61.2 140 30.0
Medtr8g077610 Medicago truncatula HOM05D005677 ORTHO05D006966 1.7e-07 61.2 141 31.9
BraA09t39853Z Brassica rapa HOM05D005677 ORTHO05D006966 2.2e-07 60.8 194 27.3
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 2.2e-07 60.8 161 32.3
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 3.7e-07 60.1 122 34.4
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 3.7e-07 60.1 211 24.6
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 3.7e-07 60.1 108 36.1
MCO11G773 Micromonas commoda HOM05D001602 ORTHO05D006966 4.8e-07 59.7 190 28.9
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.8e-07 59.7 99 40.4
Sabra07G0022600 Salix brachista HOM05D005677 ORTHO05D006966 4.8e-07 59.7 147 31.3
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 4.8e-07 59.7 164 29.9
HPP92_022639 Vanilla planifolia HOM05D006469 ORTHO05D008034 4.8e-07 59.7 89 40.4
Dinv39987 Davidia involucrata HOM05D005677 ORTHO05D006966 6.3e-07 59.3 136 33.8
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 6.3e-07 59.3 145 30.3
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 6.3e-07 59.3 140 29.3
COL.COLO4_22080 Corchorus olitorius HOM05D005677 ORTHO05D006966 1.1e-06 58.5 170 31.8
MD06G1042700 Malus domestica HOM05D001602 ORTHO05D001470 1.1e-06 58.5 162 30.2
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.1e-06 58.5 139 30.9
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 1.4e-06 58.2 140 32.1
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 1.4e-06 58.2 121 33.1
AT3G50850 Arabidopsis thaliana HOM05D005677 ORTHO05D006966 1.8e-06 57.8 141 29.8
BcaC04g21860 Brassica carinata HOM05D001602 ORTHO05D001470 1.8e-06 57.8 105 34.3
C09p26540 Brassica napus HOM05D001602 ORTHO05D001470 1.8e-06 57.8 105 34.3
Carub.0005s1724 Capsella rubella HOM05D005677 ORTHO05D006966 1.8e-06 57.8 146 31.5
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 1.8e-06 57.8 123 29.3
SpUn0826_0010 Schrenkiella parvula HOM05D001602 ORTHO05D001470 1.8e-06 57.8 103 35.0
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 2.4e-06 57.4 202 26.7
BcaB07g30966 Brassica carinata HOM05D001602 ORTHO05D001470 2.4e-06 57.4 105 34.3
A09p20940 Brassica napus HOM05D001602 ORTHO05D001470 2.4e-06 57.4 105 34.3
BolC9t55550H Brassica oleracea HOM05D001602 ORTHO05D001470 2.4e-06 57.4 105 34.3
BraA09t37694Z Brassica rapa HOM05D001602 ORTHO05D001470 2.4e-06 57.4 105 34.3
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.4e-06 57.4 140 30.7
Thhalv10003267m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 2.4e-06 57.4 103 34.0
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 2.4e-06 57.4 137 31.4
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 2.4e-06 57.4 148 31.8
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 3.1e-06 57.0 198 28.8
Cpa.g.sc83.104 Carica papaya HOM05D001602 ORTHO05D001470 3.1e-06 57.0 107 33.6
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.1e-06 57.0 135 29.6
Thhalv10010630m.g Eutrema salsugineum HOM05D005677 ORTHO05D006966 3.1e-06 57.0 143 30.1
Lj2P453T29 Lonicera japonica HOM05D005677 ORTHO05D006966 3.1e-06 57.0 123 34.1
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 3.1e-06 57.0 154 29.2
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 3.1e-06 57.0 139 30.2
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 3.1e-06 57.0 170 28.8
arahy.Tifrunner.gnm1.ann1.V4VRBH Arachis hypogaea HOM05D005677 ORTHO05D006966 4.1e-06 56.6 148 29.1
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 4.1e-06 56.6 141 30.5
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 4.1e-06 56.6 140 30.0
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 5.3e-06 56.2 141 29.8
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 5.3e-06 56.2 144 27.8
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 5.3e-06 56.2 141 31.9
CBR_g6740 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-06 55.8 150 28.0
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 6.9e-06 55.8 171 29.2
Migut.D00409 Erythranthe guttata HOM05D001920 ORTHO05D004895 6.9e-06 55.8 189 28.0
Sed0020674 Sechium edule HOM05D005677 ORTHO05D006966 6.9e-06 55.8 149 30.9
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 6.9e-06 55.8 117 35.0
Zm00001eb324730 Zea mays HOM05D005677 ORTHO05D006966 6.9e-06 55.8 161 28.0
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 9.1e-06 55.5 145 30.3
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 9.1e-06 55.5 147 28.6
Oeu042263.1 Olea europaea HOM05D005677 ORTHO05D006966 9.1e-06 55.5 156 30.8
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 9.1e-06 55.5 123 28.5
PRCOL_00006291 Prasinoderma coloniale HOM05D002023 ORTHO05D002049 9.1e-06 55.5 139 32.4
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 9.1e-06 55.5 102 33.3


User provided reference genes

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