Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1409.8 696 100.0
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1386.3 696 97.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1373.2 700 96.7
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1343.2 696 94.3
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1337.4 696 94.3
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1229.2 694 85.3
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1218.8 694 84.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 694 84.6
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 694 84.1
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 694 84.1
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1212.6 693 83.5
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 693 84.7
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1205.3 697 83.6
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 694 83.1
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 694 82.6
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1201.0 695 83.0
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1198.3 694 82.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1196.4 694 83.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1196.0 694 83.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 693 83.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 697 82.8
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 694 83.3
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1188.3 694 82.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 695 82.9
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 694 82.7
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1186.4 694 82.1
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 673 84.4
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 694 81.0
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 691 82.5
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1185.2 695 83.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1185.2 695 81.3
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 694 82.6
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 694 83.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 697 82.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 696 81.5
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 694 82.4
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 694 82.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 693 82.1
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 696 81.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 693 80.5
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 691 81.6
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1172.9 694 80.5
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 694 82.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 695 82.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 694 81.4
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 694 82.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 694 81.0
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 695 80.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 694 81.0
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 691 80.5
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1156.7 691 80.5
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 696 80.5
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 693 80.2
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 719 78.2
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 695 78.3
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 696 80.5
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1151.3 696 79.7
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 697 80.9
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 696 80.3
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 696 79.0
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 696 79.3
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 694 79.3
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 695 78.3
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 697 78.5
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 696 77.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 696 78.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 693 79.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 695 77.6
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 693 80.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 694 79.4
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 696 78.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 695 76.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 694 77.7
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 695 78.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 694 77.5
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 697 77.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 694 79.1
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 697 76.8
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 693 76.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 692 78.8
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1107.8 681 79.7
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 718 76.0
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1105.5 747 73.2
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1100.9 693 77.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 681 79.1
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 719 73.4
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1090.1 694 75.8
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1089.3 694 77.1
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 694 76.4
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1085.5 715 75.0
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 740 73.9
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1080.9 646 80.3
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1076.6 695 75.5
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 6.8e-309 1063.5 611 83.0
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 9.2e-306 1053.1 695 74.7
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 3.5e-305 1051.2 694 75.5
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 5.9e-305 1050.4 694 75.6
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.1e-302 1042.0 676 73.7
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 3.5e-297 1024.6 700 72.6
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-295 1019.6 695 71.4
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 3.2e-290 1001.5 703 70.4
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.1e-290 1001.1 581 82.1
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 3.0e-272 941.8 638 72.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.8e-268 927.5 540 83.0
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.5e-263 912.9 708 67.5
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 6.0e-257 891.0 581 73.8
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.0e-244 849.4 699 60.8
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 2.6e-236 822.4 539 74.6
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 3.2e-226 788.9 698 56.3
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.3e-222 776.9 708 56.9
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.4e-221 772.7 706 56.7
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.4e-221 772.7 706 56.7
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.5e-218 761.5 708 55.4
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.1e-213 745.7 470 77.2
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 3.8e-211 738.8 711 55.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 7.8e-188 661.4 386 82.1
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 5.4e-157 558.9 720 44.7
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.9e-150 536.6 377 69.8
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.5e-135 487.6 504 54.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 8.0e-108 395.6 248 77.0
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 9.7e-106 388.7 766 35.1
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 6.5e-102 375.9 814 34.3
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 3.0e-99 367.1 344 57.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.6e-95 354.8 268 65.3
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 3.1e-75 287.3 247 60.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.7e-71 274.2 250 59.6
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.7e-70 271.6 178 73.0
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 6.2e-68 263.1 184 72.3
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.0e-66 258.1 165 73.3
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.1e-61 242.3 623 30.5
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 9.9e-58 229.2 235 53.2
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.1e-48 196.4 128 71.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 8.1e-44 183.0 138 69.6
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.9e-41 174.5 108 78.7
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 9.6e-37 159.5 95 78.9
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 5.4e-32 143.7 75 89.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 6.0e-31 140.2 73 89.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.3e-30 138.3 231 39.8
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 5.3e-27 127.1 84 69.0
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 3.8e-17 94.4 87 56.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 2.5e-16 91.7 85 55.3
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.9e-13 82.0 48 83.3
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 1.6e-12 79.0 48 77.1
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.0e-06 58.2 33 75.8


User provided reference genes

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