Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 7.9e-58 226.9 113 100.0
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 2.1e-42 175.6 110 82.7
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 1.7e-36 156.0 112 78.6
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 3.8e-28 128.3 107 68.2
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 1.7e-12 76.3 92 45.7
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 8.6e-12 73.9 107 45.8
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 1.5e-11 73.2 114 39.5
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.5e-11 73.2 106 42.5
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 2.5e-11 72.4 112 42.0
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 2.5e-11 72.4 88 44.3
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 4.3e-11 71.6 93 49.5
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 4.3e-11 71.6 105 42.9
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 5.6e-11 71.2 89 44.9
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 9.5e-11 70.5 104 46.2
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 1.6e-10 69.7 107 43.9
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 2.8e-10 68.9 107 44.9
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 2.8e-10 68.9 77 51.9
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 2.8e-10 68.9 110 44.5
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 3.6e-10 68.6 107 42.1
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.6e-10 68.6 104 44.2
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 4.7e-10 68.2 93 49.5
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 4.7e-10 68.2 71 56.3
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 4.7e-10 68.2 104 45.2
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 8.1e-10 67.4 95 46.3
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 8.1e-10 67.4 104 44.2
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 8.1e-10 67.4 70 54.3
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 1.1e-09 67.0 105 42.9
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 1.1e-09 67.0 103 39.8
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 1.8e-09 66.2 106 43.4
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 1.8e-09 66.2 96 38.5
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 2.3e-09 65.9 105 43.8
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 3.1e-09 65.5 105 43.8
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 3.1e-09 65.5 105 43.8
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 4.0e-09 65.1 111 42.3
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 4.0e-09 65.1 81 46.9
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 5.2e-09 64.7 82 47.6
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 1.2e-08 63.5 96 42.7
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 1.5e-08 63.2 106 43.4
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.5e-08 63.2 81 50.6
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 2.0e-08 62.8 67 56.7
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 2.0e-08 62.8 67 56.7
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.0e-08 62.8 112 42.0
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 2.0e-08 62.8 95 46.3
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 2.6e-08 62.4 107 40.2
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 3.4e-08 62.0 100 40.0
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.4e-08 62.0 118 40.7
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 4.4e-08 61.6 92 42.4
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 5.8e-08 61.2 69 52.2
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 7.5e-08 60.8 115 42.6
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 7.5e-08 60.8 97 42.3
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 7.5e-08 60.8 104 40.4
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 7.5e-08 60.8 61 55.7
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 1.3e-07 60.1 65 53.8
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 1.3e-07 60.1 65 53.8
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 1.3e-07 60.1 110 38.2
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 1.7e-07 59.7 108 38.9
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 1.7e-07 59.7 93 39.8
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.2e-07 59.3 91 41.8
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 2.9e-07 58.9 93 44.1
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 4.9e-07 58.2 101 38.6
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 4.9e-07 58.2 108 38.0
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 4.9e-07 58.2 81 44.4
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 4.9e-07 58.2 124 37.1
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 6.4e-07 57.8 111 41.4
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 8.3e-07 57.4 112 38.4
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.1e-06 57.0 110 35.5
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.4e-06 56.6 105 37.1
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.9e-06 56.2 55 54.5
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 3.2e-06 55.5 117 38.5
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 4.1e-06 55.1 89 38.2
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 4.1e-06 55.1 45 62.2
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 5.4e-06 54.7 93 38.7
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 5.4e-06 54.7 78 46.2
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 7.1e-06 54.3 41 65.9
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 7.1e-06 54.3 41 65.9
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 9.2e-06 53.9 78 39.7


User provided reference genes

Program Settings