Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.1e-205 718.8 357 100.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 8.9e-180 633.6 358 89.9
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.4e-172 609.8 358 85.5
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.1e-118 430.6 361 65.4
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 9.2e-84 314.7 357 54.1
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 8.1e-64 248.4 379 42.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 5.2e-63 245.7 377 43.5
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.7e-58 230.7 381 42.5
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.5e-57 226.9 377 40.1
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.8e-56 223.4 367 41.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.8e-56 223.4 383 41.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 6.2e-56 222.2 388 40.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.8e-55 220.7 376 41.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 8.9e-55 218.4 367 41.7
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 7.6e-54 215.3 383 39.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 9.9e-54 214.9 327 45.0
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.9e-53 212.6 364 41.2
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 8.4e-53 211.8 375 38.9
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.9e-52 210.7 384 38.0
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 1.9e-52 210.7 362 40.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.4e-52 210.3 357 41.2
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.1e-51 207.2 380 38.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 6.0e-51 205.7 374 38.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 6.0e-51 205.7 402 36.1
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.9e-50 203.0 353 41.4
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 6.6e-50 202.2 354 41.2
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.3e-49 199.9 397 37.5
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.6e-49 199.1 176 59.1
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.6e-48 196.4 365 38.1
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 6.2e-48 195.7 371 39.9
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.1e-47 194.9 375 40.0
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-47 194.9 371 39.6
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.4e-47 194.5 371 39.9
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.8e-47 194.1 361 39.1
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.8e-47 194.1 361 39.1
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 2.4e-47 193.7 375 40.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 9.0e-47 191.8 375 37.3
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.2e-46 191.4 359 39.6
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.5e-46 191.0 362 38.4
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.5e-46 191.0 266 44.7
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.6e-46 190.3 359 38.7
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.8e-46 189.1 363 38.6
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.3e-45 188.0 371 38.0
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.4e-44 184.5 178 54.5
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.2e-44 183.3 177 57.6
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.4e-44 182.6 352 38.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.7e-43 180.3 359 37.3
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.3e-41 173.3 384 36.7
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 4.3e-41 172.9 367 34.3
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.3e-40 171.4 354 35.9
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 2.1e-40 170.6 204 49.0
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 2.1e-40 170.6 204 49.0
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 6.2e-40 169.1 367 34.1
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 6.2e-40 169.1 367 34.1
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 6.2e-40 169.1 367 34.1
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.1e-39 168.3 362 37.6
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-39 167.9 366 36.1
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.4e-39 167.2 367 35.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.1e-39 166.8 362 37.8
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 4.0e-39 166.4 194 49.0
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.3e-39 166.0 371 35.8
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 5.3e-39 166.0 348 37.6
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.5e-38 164.5 368 35.1
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.0e-38 164.1 367 34.9
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.0e-38 164.1 380 33.9
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 7.6e-38 162.2 362 37.0
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.6e-38 162.2 363 35.5
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 7.6e-38 162.2 367 36.5
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 9.9e-38 161.8 326 36.2
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.7e-37 161.0 331 37.8
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.9e-37 160.2 372 34.7
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 6.4e-37 159.1 347 35.4
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 8.4e-37 158.7 336 37.2
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.1e-36 158.3 196 47.4
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-36 157.9 170 51.8
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.4e-36 157.9 170 51.8
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.4e-36 157.1 349 36.1
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 7.1e-36 155.6 170 51.2
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 7.1e-36 155.6 170 51.2
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 9.3e-36 155.2 349 36.4
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.0e-34 151.8 198 44.4
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 2.3e-34 150.6 358 34.6
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 8.7e-34 148.7 148 54.7
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-33 147.5 357 32.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 2.5e-33 147.1 155 51.6
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 3.3e-33 146.7 222 41.4
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 4.3e-33 146.4 357 33.9
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.3e-33 146.4 353 34.0
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 4.3e-33 146.4 156 51.3
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 7.4e-33 145.6 365 34.0
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 9.6e-33 145.2 188 45.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 9.6e-33 145.2 369 32.5
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.6e-32 144.4 365 33.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.6e-32 144.4 151 49.0
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 2.1e-32 144.1 347 35.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 6.2e-32 142.5 194 42.3
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.1e-31 141.7 258 36.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.4e-31 141.4 366 33.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.8e-31 141.0 367 34.9
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 5.3e-31 139.4 368 31.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 6.9e-31 139.0 154 49.4
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 6.9e-31 139.0 354 31.9
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 9.0e-31 138.7 336 33.9
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 9.0e-31 138.7 151 50.3
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.2e-30 138.3 373 30.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.2e-30 138.3 399 31.8
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.2e-30 138.3 366 32.2
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.5e-30 137.9 366 33.3
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.5e-30 137.9 153 49.7
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 2.6e-30 137.1 361 32.1
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 8.4e-29 132.1 272 37.5
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 8.4e-29 132.1 163 42.9
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.2e-28 130.2 139 48.9
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 9.3e-28 128.6 160 45.6
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.6e-27 127.9 285 35.4
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 3.5e-27 126.7 187 43.9
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 3.5e-27 126.7 336 33.9
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.3e-25 120.2 342 32.7
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 5.6e-25 119.4 160 48.8
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.6e-24 117.9 343 32.7
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 3.7e-24 116.7 333 33.6
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.4e-23 114.0 273 33.7
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 9.0e-23 112.1 196 37.2
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 1.4e-20 104.8 159 38.4
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 9.3e-20 102.1 187 35.8
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-19 101.3 155 40.6
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.9e-17 94.4 118 44.1
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 2.8e-16 90.5 186 33.3
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 9.0e-15 85.5 172 38.4
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.5e-14 83.2 88 50.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.4e-12 78.2 277 27.4
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.7e-11 73.9 114 39.5
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 3.6e-11 73.6 90 43.3
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.0e-10 72.0 102 41.2
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 6.7e-10 69.3 148 36.5
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 1.5e-09 68.2 180 27.8
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.5e-09 67.4 363 27.8
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.4e-07 61.6 136 29.4
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 9.1e-07 58.9 117 35.9
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.5e-06 58.2 97 37.1
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 5.9e-06 56.2 127 29.1
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 7.7e-06 55.8 42 57.1


User provided reference genes

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