Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 8.5e-212 740.3 447 100.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 4.0e-185 651.7 448 86.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 6.3e-175 617.8 447 84.3
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.1e-122 443.4 443 64.8
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.0e-116 422.9 465 60.6
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 6.9e-113 411.8 452 60.2
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 9.0e-113 411.4 466 57.5
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 9.9e-112 407.9 451 60.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 9.9e-112 407.9 485 60.2
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.7e-111 407.1 427 61.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.9e-111 406.4 471 59.4
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 5.5e-110 402.1 508 54.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 2.7e-109 399.8 461 56.6
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 5.1e-108 395.6 452 60.0
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.1e-107 394.4 340 65.6
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.9e-107 393.7 461 57.5
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.3e-107 392.5 353 65.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 5.6e-107 392.1 461 57.9
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 9.6e-107 391.3 461 56.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 9.6e-107 391.3 455 58.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 2.8e-106 389.8 448 58.7
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.8e-106 389.8 298 70.5
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.8e-106 389.8 447 56.6
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.8e-106 389.8 450 57.6
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.7e-106 389.4 470 59.1
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 8.2e-106 388.3 461 60.1
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.8e-105 387.1 300 71.3
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.8e-105 387.1 474 57.4
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.8e-105 387.1 444 58.3
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.0e-105 386.0 298 69.1
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.0e-105 386.0 461 59.0
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.3e-105 385.6 474 52.3
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 9.0e-105 384.8 251 75.3
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.2e-104 384.4 251 76.1
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.2e-104 384.4 238 82.4
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.0e-104 383.6 298 69.8
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.4e-104 382.9 251 75.3
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 3.8e-103 379.4 251 78.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 6.5e-103 378.6 289 70.2
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 6.5e-103 378.6 254 74.8
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 6.5e-103 378.6 244 76.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 6.5e-103 378.6 282 70.2
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.5e-102 376.7 272 71.3
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.5e-102 376.7 290 69.7
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 4.2e-102 375.9 270 73.0
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 5.5e-102 375.6 298 65.8
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 9.3e-102 374.8 298 67.4
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.1e-101 373.6 474 58.4
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.7e-101 373.2 282 69.1
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 2.7e-101 373.2 445 55.3
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.7e-101 373.2 255 74.5
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.3e-100 370.2 488 52.9
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 8.7e-100 368.2 252 73.0
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.1e-99 367.9 478 54.8
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 2.5e-99 366.7 249 73.5
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 2.5e-99 366.7 249 73.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 9.7e-99 364.8 453 57.0
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.2e-98 363.6 291 67.0
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.8e-98 363.2 246 75.2
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.7e-98 362.8 367 58.9
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 8.2e-98 361.7 473 56.7
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.1e-97 361.3 457 59.1
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.8e-97 360.5 434 56.2
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.5e-96 357.5 449 54.8
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.0e-96 357.1 302 65.6
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 4.5e-96 355.9 467 55.5
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.3e-95 354.4 465 54.2
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.7e-95 354.0 453 53.4
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.9e-94 350.5 438 54.8
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.2e-94 349.7 302 63.9
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 4.2e-94 349.4 302 65.2
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 4.2e-94 349.4 270 68.5
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 5.5e-94 349.0 251 70.9
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.2e-93 347.8 448 54.0
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.7e-93 346.7 366 60.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.7e-93 346.7 304 63.5
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.6e-93 345.9 438 54.1
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 7.9e-93 345.1 436 54.4
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.0e-92 344.7 300 65.3
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.4e-92 344.4 302 63.2
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.4e-92 344.4 438 53.9
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.5e-91 340.9 245 72.2
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.5e-91 340.1 302 62.3
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 3.3e-91 339.7 230 73.9
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 7.4e-91 338.6 442 56.3
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 2.2e-90 337.0 269 67.3
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 6.3e-90 335.5 286 64.7
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 8.2e-90 335.1 333 59.5
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.1e-89 334.7 231 71.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 4.1e-89 332.8 243 67.1
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.4e-88 329.7 376 54.0
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 3.4e-88 329.7 248 68.1
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.5e-88 329.3 267 65.5
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 6.5e-87 325.5 271 64.6
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.1e-86 324.7 251 67.7
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.5e-86 323.6 408 51.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.2e-86 323.2 264 65.5
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 4.2e-86 322.8 468 48.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 7.2e-86 322.0 267 62.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.6e-85 320.9 422 49.5
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.6e-85 319.7 386 51.8
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.0e-84 318.2 301 59.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.4e-84 317.8 233 70.0
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.0e-84 316.6 416 51.2
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.0e-83 313.9 272 61.4
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.0e-83 313.9 453 50.1
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.3e-83 313.2 248 64.9
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 7.4e-83 312.0 499 48.5
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 4.8e-82 309.3 408 49.0
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.8e-81 307.4 496 45.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 3.5e-80 303.1 500 46.2
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.0e-79 301.6 466 50.0
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 6.1e-77 292.4 213 70.0
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 8.0e-77 292.0 430 44.7
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 5.7e-75 285.8 221 63.3
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 8.2e-74 282.0 375 49.9
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 7.7e-72 275.4 458 48.9
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.3e-63 248.1 281 49.8
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.3e-55 221.5 295 44.1
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 4.9e-50 203.0 238 47.1
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 2.4e-49 200.7 277 43.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.3e-44 184.1 270 38.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 2.9e-42 177.2 112 75.9
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.6e-40 171.4 229 39.7
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 3.0e-39 167.2 244 39.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 3.9e-39 166.8 235 43.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-35 155.2 89 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 7.5e-35 152.5 243 38.3
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.7e-34 150.2 332 40.4
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 8.3e-34 149.1 178 50.0
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.0e-31 142.1 227 39.6
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 9.9e-27 125.6 301 47.2
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.7e-26 123.6 205 31.2
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.4e-25 120.9 265 30.2
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 5.4e-25 119.8 253 41.5
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 5.4e-25 119.8 220 37.7
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 5.4e-25 119.8 146 44.5
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 6.0e-24 116.3 239 30.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 7.8e-24 115.9 236 30.5
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 3.3e-22 110.5 267 45.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.4e-17 94.4 126 44.4
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 7.8e-16 89.4 131 42.0
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 3.3e-14 84.0 211 30.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.1e-12 77.4 108 45.4
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 5.3e-12 76.6 105 44.8
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 5.3e-12 76.6 177 34.5
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 9.0e-12 75.9 105 41.9
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 8.4e-10 69.3 134 35.1
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.4e-09 67.8 54 48.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.2e-09 67.4 43 55.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 6.0e-08 63.2 116 41.4
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 9.6e-06 55.8 54 46.3


User provided reference genes

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