Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007654.2 Cucumis melo HOM05D001756 ORTHO05D001581 3.0e-38 161.4 82 100.0
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 1.1e-27 126.3 79 83.5
ClCG01G017770 Citrullus lanatus HOM05D001756 ORTHO05D001581 4.0e-19 97.8 84 67.9
Sed0002457 Sechium edule HOM05D001756 ORTHO05D001581 1.6e-12 75.9 83 56.6
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 4.0e-11 71.2 66 54.5
Sed0009191 Sechium edule HOM05D001756 ORTHO05D001581 6.9e-11 70.5 84 54.8
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.2e-10 69.7 71 57.7
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 4.5e-10 67.8 68 47.1
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.3e-09 66.2 76 52.6
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.3e-09 66.2 76 52.6
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.7e-09 65.9 69 55.1
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.7e-09 65.9 70 55.7
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 6.5e-09 63.9 74 51.4
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 8.4e-09 63.5 70 54.3
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 1.1e-08 63.2 70 50.0
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.4e-08 62.8 70 52.9
Gohir.A11G212500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.4e-08 62.8 71 49.3
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 1.4e-08 62.8 70 54.3
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 1.9e-08 62.4 73 52.1
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 1.9e-08 62.4 72 54.2
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.9e-08 62.4 76 51.3
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.5e-08 62.0 70 51.4
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 3.2e-08 61.6 78 43.6
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.2e-08 61.6 74 48.6
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.2e-08 61.6 74 48.6
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 4.2e-08 61.2 70 51.4
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 7.1e-08 60.5 76 51.3
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 9.3e-08 60.1 78 46.2
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 9.3e-08 60.1 72 45.8
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 9.3e-08 60.1 72 50.0
Ciclev10026870m.g Citrus clementina HOM05D001756 ORTHO05D001581 1.2e-07 59.7 70 54.3
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 1.2e-07 59.7 78 52.6
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 1.2e-07 59.7 74 47.3
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.2e-07 59.7 78 46.2
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 1.2e-07 59.7 74 54.1
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.6e-07 59.3 75 46.7
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.6e-07 59.3 83 47.0
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.6e-07 59.3 80 46.2
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 2.1e-07 58.9 78 47.4
Gohir.A03G181100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.1e-07 58.9 72 47.2
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.1e-07 58.9 83 47.0
Prupe.8G150200 Prunus persica HOM05D001756 ORTHO05D001581 2.1e-07 58.9 82 43.9
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.1e-07 58.9 78 50.0
CSS0014839 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.7e-07 58.5 76 51.3
CSS0047712 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.7e-07 58.5 76 51.3
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.7e-07 58.5 78 46.2
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.7e-07 58.5 70 52.9
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 2.7e-07 58.5 70 52.9
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 3.5e-07 58.2 74 48.6
PSO675G3090 Papaver somniferum HOM05D001756 ORTHO05D001581 3.5e-07 58.2 70 47.1
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 4.6e-07 57.8 69 46.4
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 4.6e-07 57.8 71 52.1
FvH4_2g03340 Fragaria vesca HOM05D001756 ORTHO05D001581 4.6e-07 57.8 69 46.4
Gohir.A06G025000 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.6e-07 57.8 70 51.4
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 4.6e-07 57.8 79 44.3
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 6.1e-07 57.4 70 51.4
TWI74G0998 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 6.1e-07 57.4 69 47.8
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 7.9e-07 57.0 83 47.0
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 7.9e-07 57.0 71 52.1
RcHm_v2.0_Chr6g0248481 Rosa chinensis HOM05D001756 ORTHO05D001581 7.9e-07 57.0 71 46.5
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 7.9e-07 57.0 82 47.6
unitig_27.g25104 Utricularia gibba HOM05D001756 ORTHO05D001581 7.9e-07 57.0 78 46.2
ATR0739G092 Amborella trichopoda HOM05D001756 ORTHO05D001581 1.0e-06 56.6 76 46.1
arahy.Tifrunner.gnm1.ann1.PFXG53 Arachis hypogaea HOM05D001756 ORTHO05D001581 1.0e-06 56.6 76 50.0
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 1.0e-06 56.6 73 46.6
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 1.0e-06 56.6 72 52.8
Lsat_1_v5_gn_3_86460 Lactuca sativa HOM05D001756 ORTHO05D001581 1.0e-06 56.6 70 48.6
Nitab4.5_0000142g0340 Nicotiana tabacum HOM05D001756 ORTHO05D001581 1.0e-06 56.6 73 49.3
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 1.0e-06 56.6 70 48.6
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 1.3e-06 56.2 78 51.3
MD15G1066300 Malus domestica HOM05D001756 ORTHO05D001581 1.3e-06 56.2 80 46.2
Potri.009G085600 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.3e-06 56.2 67 43.3
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 1.3e-06 56.2 68 47.1
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 1.3e-06 56.2 70 45.7
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-06 56.2 79 43.0
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 1.3e-06 56.2 74 50.0
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.8e-06 55.8 65 47.7
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.8e-06 55.8 69 49.3
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 1.8e-06 55.8 78 46.2
Eucgr.I02494 Eucalyptus grandis HOM05D001756 ORTHO05D001581 1.8e-06 55.8 68 47.1
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.8e-06 55.8 74 48.6
Glyma.10G255800 Glycine max HOM05D001756 ORTHO05D001581 1.8e-06 55.8 70 47.1
Glyma.20G135700 Glycine max HOM05D001756 ORTHO05D001581 1.8e-06 55.8 70 47.1
Gohir.D05G214800 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.8e-06 55.8 76 51.3
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 1.8e-06 55.8 74 47.3
TWI59G0044 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.8e-06 55.8 78 43.6
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 2.3e-06 55.5 69 50.7
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 2.3e-06 55.5 69 50.7
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.3e-06 55.5 73 53.4
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 2.3e-06 55.5 76 44.7
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.3e-06 55.5 76 44.7
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.3e-06 55.5 74 51.4
Gorai.005G229900 Gossypium raimondii HOM05D001756 ORTHO05D001581 2.3e-06 55.5 72 47.2
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 2.3e-06 55.5 73 46.6
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 3.0e-06 55.1 74 45.9
Duzib187G0009 Durio zibethinus HOM05D001756 ORTHO05D001581 3.0e-06 55.1 71 45.1
Nn5g30652 Nelumbo nucifera HOM05D001756 ORTHO05D001581 3.0e-06 55.1 71 45.1
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.9e-06 54.7 68 44.1
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 3.9e-06 54.7 86 45.3
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 3.9e-06 54.7 68 42.6
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 3.9e-06 54.7 68 48.5
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 3.9e-06 54.7 72 48.6
Lsat_1_v5_gn_5_117161 Lactuca sativa HOM05D001756 ORTHO05D001581 3.9e-06 54.7 81 45.7
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 3.9e-06 54.7 71 46.5
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 3.9e-06 54.7 68 48.5
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 3.9e-06 54.7 71 45.1
BcaC03g18360 Brassica carinata HOM05D001756 ORTHO05D001581 5.1e-06 54.3 77 49.4
A02p44100 Brassica napus HOM05D001756 ORTHO05D001581 5.1e-06 54.3 77 49.4
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 5.1e-06 54.3 74 47.3
C02p64360 Brassica napus HOM05D001756 ORTHO05D001581 5.1e-06 54.3 77 49.4
BraA02t09333Z Brassica rapa HOM05D001756 ORTHO05D001581 5.1e-06 54.3 77 49.4
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 5.1e-06 54.3 74 47.3
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 5.1e-06 54.3 73 46.6
Glyma.05G107800 Glycine max HOM05D001756 ORTHO05D001581 5.1e-06 54.3 56 53.6
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 5.1e-06 54.3 70 47.1
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 5.1e-06 54.3 80 45.0
Rhsim08G0091000 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.1e-06 54.3 78 43.6
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 5.1e-06 54.3 80 45.0
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 6.7e-06 53.9 72 44.4
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 6.7e-06 53.9 74 45.9
Gohir.A05G211500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 6.7e-06 53.9 76 51.3
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 6.7e-06 53.9 70 47.1
MBI16_g16475_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 6.7e-06 53.9 59 52.5
Nn6g34517 Nelumbo nucifera HOM05D001756 ORTHO05D001581 6.7e-06 53.9 71 50.7
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 6.7e-06 53.9 68 47.1
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 6.7e-06 53.9 68 47.1
Sabra09G0065700 Salix brachista HOM05D001756 ORTHO05D001581 6.7e-06 53.9 68 42.6
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 8.7e-06 53.5 77 45.5
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 8.7e-06 53.5 66 45.5
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 8.7e-06 53.5 70 44.3
MBI16_g27034_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 8.7e-06 53.5 70 48.6
MBI16_g32087_MAGBIO Magnolia biondii HOM05D001756 ORTHO05D001581 8.7e-06 53.5 59 52.5
Sed0023507 Sechium edule HOM05D001756 ORTHO05D001581 8.7e-06 53.5 73 45.2


User provided reference genes

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