Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007626.2 Cucumis melo HOM05D000359 ORTHO05D028955 3.2e-148 528.5 280 100.0
ClCG01G017490 Citrullus lanatus HOM05D000359 ORTHO05D028955 9.3e-116 420.6 284 82.0
CsaV3_6G044050 Cucumis sativus L. HOM05D000359 ORTHO05D028955 4.3e-89 332.0 180 95.0
Sed0012526 Sechium edule HOM05D000359 ORTHO05D028955 1.2e-78 297.4 274 64.2
ClCG02G012130 Citrullus lanatus HOM05D000359 ORTHO05D000251 2.7e-30 136.7 291 36.4
MELO3C020840.2 Cucumis melo HOM05D000359 ORTHO05D000251 6.2e-27 125.6 271 36.9
CsaV3_2G016290 Cucumis sativus L. HOM05D000359 ORTHO05D000251 8.1e-27 125.2 270 37.4
GSVIVG01000127001 Vitis vinifera HOM05D000359 ORTHO05D000251 8.1e-27 125.2 318 36.5
PGSC0003DMG400021449 Solanum tuberosum HOM05D000359 ORTHO05D000251 2.0e-25 120.6 306 35.3
CAN.G1075.26 Capsicum annuum HOM05D000359 ORTHO05D000251 7.6e-25 118.6 282 37.9
Solyc02g092470.3 Solanum lycopersicum HOM05D000359 ORTHO05D000251 7.6e-25 118.6 300 35.3
Sopen02g037030 Solanum pennellii HOM05D000359 ORTHO05D000251 9.9e-25 118.2 300 35.3
Haze_15294 Corylus avellana HOM05D000359 ORTHO05D000251 1.4e-23 114.4 259 39.0
Nitab4.5_0001417g0110 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.1e-23 112.8 284 35.6
Sed0019863 Sechium edule HOM05D000359 ORTHO05D000251 2.7e-22 110.2 270 34.4
Hma1.2p1_0730F.1_g209780 Hydrangea macrophylla HOM05D000359 ORTHO05D000251 3.5e-22 109.8 267 35.6
FAN19G2500 Fragaria x ananassa HOM05D000359 ORTHO05D000251 4.6e-22 109.4 259 39.4
Prupe.6G222200 Prunus persica HOM05D000359 ORTHO05D000251 4.6e-22 109.4 248 39.5
Actinidia32834 Actinidia chinensis HOM05D000359 ORTHO05D000251 6.0e-22 109.0 246 37.8
QL06p039685 Quercus lobata HOM05D000359 ORTHO05D000251 7.8e-22 108.6 290 34.1
Ciclev10024805m.g Citrus clementina HOM05D000359 ORTHO05D000251 1.0e-21 108.2 249 36.9
FAN28G2168 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.0e-21 108.2 181 43.1
Psat2g170920 Pisum sativum HOM05D000359 ORTHO05D000251 1.0e-21 108.2 308 36.4
arahy.Tifrunner.gnm1.ann1.T383Y7 Arachis hypogaea HOM05D000359 ORTHO05D000251 1.3e-21 107.8 240 40.0
FAN23G2493 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.3e-21 107.8 276 37.3
Cpa.g.sc6.29 Carica papaya HOM05D000359 ORTHO05D000251 2.3e-21 107.1 147 47.6
Nitab4.5_0006464g0010 Nicotiana tabacum HOM05D000359 ORTHO05D000251 2.3e-21 107.1 218 38.1
COL.COLO4_11563 Corchorus olitorius HOM05D000359 ORTHO05D000251 3.0e-21 106.7 211 40.3
Eucgr.I00712 Eucalyptus grandis HOM05D000359 ORTHO05D000251 3.0e-21 106.7 223 39.9
Thecc.01G071400 Theobroma cacao HOM05D000359 ORTHO05D000251 3.0e-21 106.7 226 40.7
Dinv04062 Davidia involucrata HOM05D000359 ORTHO05D000251 3.9e-21 106.3 282 36.5
Thhalv10003621m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 3.9e-21 106.3 259 37.8
FAN26G1745 Fragaria x ananassa HOM05D000359 ORTHO05D000251 3.9e-21 106.3 259 39.4
TWI53G0333 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 3.9e-21 106.3 190 42.1
CiPaw.01G005700 Carya illinoinensis HOM05D000359 ORTHO05D000251 5.1e-21 105.9 147 46.9
Nitab4.5_0001851g0020 Nicotiana tabacum HOM05D000359 ORTHO05D000251 6.6e-21 105.5 310 31.9
BcaC03g18370 Brassica carinata HOM05D000359 ORTHO05D000251 1.1e-20 104.8 245 38.4
FvH4_1g17500 Fragaria vesca HOM05D000359 ORTHO05D000251 1.1e-20 104.8 259 39.0
Nitab4.5_0000651g0180 Nicotiana tabacum HOM05D000359 ORTHO05D000251 1.1e-20 104.8 295 32.5
arahy.Tifrunner.gnm1.ann1.AJ8HS3 Arachis hypogaea HOM05D000359 ORTHO05D000251 1.5e-20 104.4 240 39.2
Duzib187G0532 Durio zibethinus HOM05D000359 ORTHO05D000251 1.5e-20 104.4 170 44.7
vmacro18030 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.5e-20 104.4 259 36.3
CSS0011643 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.9e-20 104.0 244 41.8
Dinv26919 Davidia involucrata HOM05D000359 ORTHO05D000251 1.9e-20 104.0 220 36.8
Actinidia16432 Actinidia chinensis HOM05D000359 ORTHO05D000251 2.5e-20 103.6 270 35.6
Duzib147G0863 Durio zibethinus HOM05D000359 ORTHO05D000251 2.5e-20 103.6 224 41.5
AL8G43830 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 4.3e-20 102.8 239 37.7
VMungo1215G1518 Vigna mungo HOM05D000359 ORTHO05D000251 5.6e-20 102.4 297 34.7
CARHR280120 Cardamine hirsuta HOM05D000359 ORTHO05D000251 9.6e-20 101.7 238 37.4
Potri.007G054900 Populus trichocarpa HOM05D000359 ORTHO05D000251 9.6e-20 101.7 252 35.3
Gorai.007G222600 Gossypium raimondii HOM05D000359 ORTHO05D000251 1.2e-19 101.3 174 42.5
Gohir.A11G215800 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.6e-19 100.9 171 43.3
Aa31LG1G16030 Aethionema arabicum HOM05D000359 ORTHO05D000251 2.8e-19 100.1 235 38.3
Gohir.D12G074600 Gossypium hirsutum HOM05D000359 ORTHO05D000251 2.8e-19 100.1 222 41.9
Gorai.008G082700 Gossypium raimondii HOM05D000359 ORTHO05D000251 2.8e-19 100.1 224 38.8
MD15G1295600 Malus domestica HOM05D000359 ORTHO05D000251 2.8e-19 100.1 206 37.9
Sp2g29180 Schrenkiella parvula HOM05D000359 ORTHO05D000251 3.6e-19 99.8 229 38.9
THA.LOC104821224 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 3.6e-19 99.8 230 36.5
Carub.0008s2700 Capsella rubella HOM05D000359 ORTHO05D000251 4.7e-19 99.4 230 39.6
Gohir.A12G076200 Gossypium hirsutum HOM05D000359 ORTHO05D000251 4.7e-19 99.4 223 39.5
MD02G1184200 Malus domestica HOM05D000359 ORTHO05D000251 4.7e-19 99.4 300 36.7
Manes.13G112600 Manihot esculenta HOM05D000359 ORTHO05D000251 4.7e-19 99.4 175 42.3
TWI09G1057 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 6.2e-19 99.0 227 38.3
DCAR_025793 Daucus carota HOM05D000359 ORTHO05D000251 1.1e-18 98.2 276 38.8
Medtr5g015690 Medicago truncatula HOM05D000359 ORTHO05D000251 1.8e-18 97.4 307 32.6
AT5G67470 Arabidopsis thaliana HOM05D000359 ORTHO05D000251 2.4e-18 97.1 239 35.1
Phvul.002G011800 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 3.1e-18 96.7 265 34.7
BcaB02g09925 Brassica carinata HOM05D000359 ORTHO05D000251 4.0e-18 96.3 231 42.0
Cc07_g06990 Coffea canephora HOM05D000359 ORTHO05D000251 4.0e-18 96.3 246 36.6
RcHm_v2.0_Chr2g0107731 Rosa chinensis HOM05D000359 ORTHO05D000251 4.0e-18 96.3 250 39.2
C03p59540 Brassica napus HOM05D000359 ORTHO05D000251 5.2e-18 95.9 231 38.5
Cfa004119 Carpinus fangiana HOM05D000359 ORTHO05D000251 5.2e-18 95.9 207 39.6
THA.LOC104827580 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 5.2e-18 95.9 298 32.2
Atru.chr3.180 Acer truncatum HOM05D000359 ORTHO05D000251 6.8e-18 95.5 167 42.5
Atru.chr3.151 Acer truncatum HOM05D000359 ORTHO05D000251 8.9e-18 95.1 273 37.0
Peaxi162Scf00302g01417 Petunia axillaris HOM05D000359 ORTHO05D000251 8.9e-18 95.1 198 37.4
PGR004G2734 Punica granatum HOM05D000359 ORTHO05D000251 8.9e-18 95.1 279 37.3
BcaC01g02875 Brassica carinata HOM05D000359 ORTHO05D000251 1.2e-17 94.7 230 40.4
BolC3t18217H Brassica oleracea HOM05D000359 ORTHO05D000251 1.2e-17 94.7 230 40.4
Gohir.D11G207500 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.2e-17 94.7 158 41.8
Nn1g04582 Nelumbo nucifera HOM05D000359 ORTHO05D000251 1.2e-17 94.7 222 39.2
Oeu003562.1 Olea europaea HOM05D000359 ORTHO05D000251 1.2e-17 94.7 283 33.2
Manes.12G113300 Manihot esculenta HOM05D000359 ORTHO05D000251 2.6e-17 93.6 237 36.7
Peaxi162Scf00118g01930 Petunia axillaris HOM05D000359 ORTHO05D000251 2.6e-17 93.6 309 30.7
BraA06t26225Z Brassica rapa HOM05D000359 ORTHO05D000251 5.8e-17 92.4 256 37.5
Lsat_1_v5_gn_3_86100 Lactuca sativa HOM05D000359 ORTHO05D000251 9.9e-17 91.7 316 30.7
Lj2g0013182 Lotus japonicus HOM05D000359 ORTHO05D000251 9.9e-17 91.7 250 34.4
Lalb_Chr05g0225921 Lupinus albus HOM05D000359 ORTHO05D000251 9.9e-17 91.7 313 31.9
C02p64450 Brassica napus HOM05D000359 ORTHO05D000251 1.3e-16 91.3 239 36.4
Lsat_1_v5_gn_2_83180 Lactuca sativa HOM05D000359 ORTHO05D000251 2.2e-16 90.5 296 31.8
Lalb_Chr05g0213661 Lupinus albus HOM05D000359 ORTHO05D000251 2.2e-16 90.5 232 34.5
A06p32930 Brassica napus HOM05D000359 ORTHO05D000251 2.9e-16 90.1 259 39.8
Lj4A162T70 Lonicera japonica HOM05D000359 ORTHO05D000251 4.9e-16 89.4 249 34.9
Glyma.17G161400 Glycine max HOM05D000359 ORTHO05D000251 8.4e-16 88.6 302 33.4
Ca_24703_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 1.1e-15 88.2 262 34.7
MSTRG.23678 Avicennia marina HOM05D000359 ORTHO05D000251 2.4e-15 87.0 264 33.0
Duzib264G0093 Durio zibethinus HOM05D000359 ORTHO05D000251 2.4e-15 87.0 221 36.2
SalBow3G2261 Salvia bowleyana HOM05D000359 ORTHO05D000251 3.2e-15 86.7 285 34.4
SalBow3G3290 Salvia bowleyana HOM05D000359 ORTHO05D000251 3.2e-15 86.7 285 34.4
TAR376G0367 Trochodendron aralioides HOM05D000359 ORTHO05D000251 3.2e-15 86.7 263 34.6
Aqoxy6G02667 Aquilegia oxysepala HOM05D000359 ORTHO05D000251 4.2e-15 86.3 311 34.1
MSTRG.2822 Avicennia marina HOM05D000359 ORTHO05D000251 5.4e-15 85.9 234 32.9
Phvul.003G235600 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 5.4e-15 85.9 219 38.8
PGSC0003DMG400014869 Solanum tuberosum HOM05D000359 ORTHO05D000251 7.1e-15 85.5 275 28.7
HanXRQChr00c1257g0578881 Helianthus annuus HOM05D000359 ORTHO05D000251 2.7e-14 83.6 129 40.3
HanXRQChr12g0376371 Helianthus annuus HOM05D000359 ORTHO05D000251 4.6e-14 82.8 231 32.5
VMungo0251G1129 Vigna mungo HOM05D000359 ORTHO05D000251 4.6e-14 82.8 215 40.9
CSS0009946 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 7.8e-14 82.0 300 35.3
Lalb_Chr16g0389221 Lupinus albus HOM05D000359 ORTHO05D000251 7.8e-14 82.0 302 36.4
Rhsim08G0094200 Rhododendron simsii HOM05D000359 ORTHO05D000251 1.7e-13 80.9 225 38.2
BolC2t12509H Brassica oleracea HOM05D000359 ORTHO05D000251 2.3e-13 80.5 250 34.8
PSO017G2292 Papaver somniferum HOM05D000359 ORTHO05D000251 3.9e-13 79.7 216 34.7
Glyma.01G193200 Glycine max HOM05D000359 ORTHO05D000251 6.6e-13 79.0 305 30.2
PSO170G4332 Papaver somniferum HOM05D000359 ORTHO05D000251 6.6e-13 79.0 241 32.4
Glyma.05G105100 Glycine max HOM05D000359 ORTHO05D000251 8.7e-13 78.6 250 35.2
Oeu025659.1 Olea europaea HOM05D000359 ORTHO05D000251 8.7e-13 78.6 305 32.1
Oeu025660.1 Olea europaea HOM05D000359 ORTHO05D000251 8.7e-13 78.6 305 32.1
CSS0043305 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 2.5e-12 77.0 300 34.0
Oeu013302.1 Olea europaea HOM05D000359 ORTHO05D000251 4.3e-12 76.3 288 34.4
PSO541G4119 Papaver somniferum HOM05D000359 ORTHO05D000251 5.6e-12 75.9 157 37.6
PSO675G6500 Papaver somniferum HOM05D000359 ORTHO05D000251 5.6e-12 75.9 234 35.0
ECA238G1627 Erigeron canadensis HOM05D000359 ORTHO05D000251 1.3e-11 74.7 226 31.9
Sc16g0002980 Simmondsia chinensis HOM05D000359 ORTHO05D000251 1.6e-11 74.3 232 32.8
unitig_899.g14587 Utricularia gibba HOM05D000359 ORTHO05D000251 2.1e-11 73.9 262 33.2
arahy.Tifrunner.gnm1.ann1.319RNX Arachis hypogaea HOM05D000359 ORTHO05D000251 8.1e-11 72.0 255 29.8
Migut.H00357 Erythranthe guttata HOM05D000359 ORTHO05D000251 8.1e-11 72.0 211 31.8
SGA_v2.0_scaffold15G07444 Striga asiatica HOM05D000359 ORTHO05D000251 8.1e-11 72.0 267 33.0
arahy.Tifrunner.gnm1.ann1.3G6XFB Arachis hypogaea HOM05D000359 ORTHO05D000251 3.1e-10 70.1 223 30.0
Ca_22118_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 6.9e-10 68.9 255 34.5
Glyma.11G048600 Glycine max HOM05D000359 ORTHO05D000251 9.0e-10 68.6 266 33.5
Ah.03g140430 Amaranthus hybridus HOM05D000359 ORTHO05D000251 2.6e-09 67.0 264 32.2
Hund13945 Selenicereus undatus HOM05D000359 ORTHO05D000251 3.4e-09 66.6 260 32.7
Ca_22111_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 4.4e-09 66.2 225 35.6
EL10Ac6g15632 Beta vulgaris HOM05D000359 ORTHO05D000251 9.9e-09 65.1 179 33.5
Lalb_Chr09g0323551 Lupinus albus HOM05D000359 ORTHO05D000251 2.2e-08 63.9 132 34.8
Medtr4g095780 Medicago truncatula HOM05D000359 ORTHO05D000251 1.9e-07 60.8 262 31.7
Sopen03g007890 Solanum pennellii HOM05D000359 ORTHO05D000251 7.9e-06 55.5 199 34.2


User provided reference genes

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