Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 2919.0 1639 100.0
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 2523.8 1672 88.5
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2503.8 1672 86.8
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 2090.5 1674 75.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 2058.1 1675 74.6
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1360.9 1713 56.0
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1348.6 1708 55.0
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1302.0 1704 53.8
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1298.9 1709 53.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1288.5 1707 53.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1283.1 1710 53.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1248.4 1695 52.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1226.1 1704 51.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1221.1 1708 51.3
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1207.2 1682 52.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1206.8 1705 51.4
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1188.3 1708 51.1
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1187.6 1703 51.4
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1181.0 1703 51.2
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1162.5 1703 50.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1158.7 1703 50.6
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1146.3 1710 50.3
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1144.8 1710 50.5
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1139.4 1713 50.7
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1133.6 1706 49.8
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1114.4 1715 50.1
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1110.9 1708 49.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1107.4 1708 49.9
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1106.3 1687 49.2
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1090.1 1695 48.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1089.7 1598 51.1
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1084.3 1709 50.0
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1078.5 1700 47.8
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 3.8e-310 1068.9 1714 47.9
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 1.6e-308 1063.5 1727 47.7
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 8.2e-305 1051.2 1715 48.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 2.2e-302 1043.1 1712 48.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 4.7e-300 1035.4 1586 49.2
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 1.4e-299 1033.9 1707 47.2
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 2.8e-297 1026.2 1711 48.3
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 1.4e-296 1023.8 1682 47.9
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 5.3e-296 1021.9 1739 46.9
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.5e-294 1015.0 1719 45.3
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 7.2e-293 1011.5 1690 48.3
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 9.4e-293 1011.1 1728 46.3
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 9.1e-288 994.6 1719 46.9
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 3.5e-287 992.6 1724 45.9
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 9.4e-285 984.6 1699 47.0
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 6.1e-284 981.9 1696 46.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 5.7e-282 975.3 1661 46.4
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 9.1e-280 968.0 1681 46.5
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 9.1e-280 968.0 1676 47.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 1.2e-279 967.6 1684 46.6
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 7.7e-279 964.9 1624 47.6
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 1.0e-278 964.5 1692 45.3
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 5.0e-278 962.2 1690 46.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 3.0e-275 953.0 1735 44.6
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 1.3e-273 947.6 1705 44.9
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 5.9e-271 938.7 1706 45.1
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 2.3e-270 936.8 1694 45.3
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 2.9e-270 936.4 1685 46.4
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 3.9e-270 936.0 1701 42.4
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 4.0e-267 926.0 1717 44.8
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 6.8e-267 925.2 1713 44.4
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 4.4e-266 922.5 1718 44.5
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 4.4e-266 922.5 1735 43.2
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 5.8e-266 922.2 1697 45.4
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 1.6e-263 914.1 1688 45.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 2.1e-260 903.7 1706 43.1
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 3.6e-260 902.9 1701 45.1
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 5.4e-256 889.0 1619 44.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 7.1e-256 888.6 1696 44.9
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 3.7e-249 866.3 1676 44.5
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 1.0e-246 858.2 1728 41.6
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 1.1e-245 854.7 1722 41.1
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 9.3e-240 835.1 1717 40.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 3.9e-238 829.7 1578 43.9
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 1.6e-236 824.3 1667 43.6
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 1.8e-235 820.8 1686 43.4
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 4.9e-233 812.8 1578 44.5
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 3.5e-231 806.6 1650 43.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 1.8e-227 794.3 1630 42.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 9.9e-226 788.5 1629 41.8
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.3e-222 778.1 1055 53.8
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 1.6e-220 771.2 1686 42.1
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 6.9e-219 765.8 1767 38.6
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 3.8e-217 760.0 1633 42.0
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 3.8e-217 760.0 1622 41.1
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 2.5e-216 757.3 1632 42.0
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 7.9e-215 752.3 1763 37.8
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 3.3e-213 746.9 1192 49.0
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 4.3e-213 746.5 1575 42.0
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 9.6e-213 745.3 1569 42.4
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 2.0e-210 737.6 1716 39.8
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 4.2e-200 703.4 1685 41.0
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 6.1e-199 699.5 1029 52.5
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 1.1e-192 678.7 1704 37.1
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 2.4e-187 661.0 1617 39.5
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 1.6e-183 648.3 1621 38.7
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 7.0e-179 632.9 1700 36.2
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 9.4e-176 622.5 1537 39.7
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 2.7e-167 594.3 1541 37.1
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.7e-162 577.8 491 70.9
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.8e-159 567.8 947 48.7
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.8e-158 563.1 966 44.9
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 1.2e-149 535.8 1743 36.0
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 4.0e-134 484.2 1493 37.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 9.9e-125 453.0 1482 37.1
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 9.9e-125 453.0 1482 37.1
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 9.9e-125 453.0 1482 37.1
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 7.8e-122 443.4 1705 32.7
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.0e-121 441.4 509 53.0
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.3e-120 438.0 1483 36.9
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 3.6e-119 434.5 1483 36.5
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.6e-106 392.5 1875 33.5
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.9e-104 385.6 1352 34.9
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.1e-98 365.5 1684 34.2
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 2.6e-93 348.6 1569 32.7
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.1e-83 316.6 1722 30.3
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.4e-83 316.2 430 48.4
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-69 269.6 942 30.5
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.6e-66 259.6 479 41.1
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.6e-61 243.0 257 56.8
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.1e-59 236.9 257 56.0
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.7e-58 231.5 1121 33.7
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.5e-48 199.9 1007 33.3
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.3e-47 196.8 1009 27.9
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 3.7e-39 168.7 406 37.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 4.6e-37 161.8 521 32.1
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.1e-20 105.1 249 37.3
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 8.9e-17 94.4 76 67.1
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.6e-16 92.8 666 27.6
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.2e-14 85.9 1877 26.6
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 2.7e-13 82.8 148 35.8
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.5e-13 82.4 1992 25.6
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.3e-11 75.9 380 26.8
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 4.3e-11 75.5 1532 24.8
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 7.3e-11 74.7 46 76.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.8e-09 70.1 44 75.0
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.8e-09 70.1 44 75.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.4e-08 65.5 1866 25.8
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.2e-06 58.9 185 30.8


User provided reference genes

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