Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 1.6e-48 195.7 95 100.0
CsaV3_6G043150 Cucumis sativus L. HOM05D007434 ORTHO05D009541 1.0e-45 186.4 95 95.8
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 7.2e-36 153.7 102 77.5
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 8.8e-26 120.2 94 67.0
Sed0003827 Sechium edule HOM05D007434 ORTHO05D009541 2.9e-21 105.1 94 63.8
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 1.2e-14 83.2 84 54.8
FvH4_1g15740 Fragaria vesca HOM05D007434 ORTHO05D009541 1.5e-12 76.3 101 43.6
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 1.5e-12 76.3 84 47.6
FAN23G2206 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.9e-12 75.9 102 42.2
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 2.5e-12 75.5 94 40.4
Ciclev10027106m.g Citrus clementina HOM05D007434 ORTHO05D009541 9.5e-12 73.6 96 44.8
FAN28G0198 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.2e-11 73.2 101 41.6
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.6e-11 72.8 97 41.2
Potri.007G041500 Populus trichocarpa HOM05D007434 ORTHO05D009541 2.1e-11 72.4 95 43.2
CiPaw.02G009300 Carya illinoinensis HOM05D007434 ORTHO05D009541 6.1e-11 70.9 89 46.1
Nn5g30204 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.3e-10 68.9 91 44.0
CiPaw.01G021200 Carya illinoinensis HOM05D007434 ORTHO05D009541 4.0e-10 68.2 93 45.2
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 6.8e-10 67.4 82 47.6
Atru.chr3.392 Acer truncatum HOM05D007434 ORTHO05D009541 8.8e-10 67.0 93 40.9
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 1.5e-09 66.2 95 44.2
TPR.G19016 Trifolium pratense HOM05D007434 ORTHO05D009541 2.0e-09 65.9 88 44.3
Phvul.002G020200 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 1.3e-08 63.2 105 40.0
Glyma.11G057300 Glycine max HOM05D007434 ORTHO05D009541 1.7e-08 62.8 86 43.0
Haze_15425 Corylus avellana HOM05D007434 ORTHO05D009541 2.2e-08 62.4 72 50.0
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 3.7e-08 61.6 104 37.5
Glyma.05G083900 Glycine max HOM05D007434 ORTHO05D009541 4.9e-08 61.2 86 41.9
Lalb_Chr05g0213231 Lupinus albus HOM05D007434 ORTHO05D009541 4.9e-08 61.2 93 38.7
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 6.3e-08 60.8 84 45.2
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 6.3e-08 60.8 89 39.3
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 8.3e-08 60.5 90 37.8
FAN19G1812 Fragaria x ananassa HOM05D007434 ORTHO05D019139 1.1e-07 60.1 82 42.7
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 1.1e-07 60.1 83 41.0
Lj2g0026149 Lotus japonicus HOM05D007434 ORTHO05D009541 1.4e-07 59.7 85 41.2
Lalb_Chr09g0333721 Lupinus albus HOM05D007434 ORTHO05D009541 1.4e-07 59.7 93 40.9
QL06p042046 Quercus lobata HOM05D008581 ORTHO05D009966 1.4e-07 59.7 110 40.0
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 1.8e-07 59.3 83 39.8
QL06p042132 Quercus lobata HOM05D008581 ORTHO05D009966 1.8e-07 59.3 113 39.8
Glyma.01G184900 Glycine max HOM05D007434 ORTHO05D009541 2.4e-07 58.9 85 42.4
Lj4g0021906 Lotus japonicus HOM05D007434 ORTHO05D009541 2.4e-07 58.9 93 36.6
Lalb_Chr05g0213221 Lupinus albus HOM05D007434 ORTHO05D009541 2.4e-07 58.9 86 41.9
QL06p042091 Quercus lobata HOM05D008581 ORTHO05D009966 2.4e-07 58.9 110 40.0
COL.COLO4_11386 Corchorus olitorius HOM05D007434 ORTHO05D009541 3.1e-07 58.5 87 39.1
Manes.12G100200 Manihot esculenta HOM05D007434 ORTHO05D009541 3.1e-07 58.5 94 39.4
Atru.chr3.391 Acer truncatum HOM05D007434 ORTHO05D009541 4.1e-07 58.2 92 33.7
Aqoxy6G01381 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 5.4e-07 57.8 76 43.4
Lalb_Chr09g0323081 Lupinus albus HOM05D007434 ORTHO05D009541 5.4e-07 57.8 91 36.3
TPR.G21269 Trifolium pratense HOM05D007434 ORTHO05D009541 5.4e-07 57.8 83 39.8
Gohir.A02G159900 Gossypium hirsutum HOM05D007434 ORTHO05D009541 7.0e-07 57.4 98 43.9
Gohir.D03G020700 Gossypium hirsutum HOM05D007434 ORTHO05D009541 7.0e-07 57.4 98 43.9
Gorai.003G021800 Gossypium raimondii HOM05D007434 ORTHO05D009541 7.0e-07 57.4 98 43.9
arahy.Tifrunner.gnm1.ann1.T0173K Arachis hypogaea HOM05D007434 ORTHO05D009541 9.2e-07 57.0 84 42.9
Medtr5g017710 Medicago truncatula HOM05D007434 ORTHO05D009541 9.2e-07 57.0 83 38.6
Potri.005G136800 Populus trichocarpa HOM05D008581 ORTHO05D009966 9.2e-07 57.0 116 37.9
Dinv29971 Davidia involucrata HOM05D008581 ORTHO05D009541 1.2e-06 56.6 64 48.4
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 2.0e-06 55.8 96 35.4
Lalb_Chr05g0226641 Lupinus albus HOM05D007434 ORTHO05D009541 2.7e-06 55.5 87 37.9
Phvul.003G245601 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 2.7e-06 55.5 83 41.0
arahy.Tifrunner.gnm1.ann1.0D7IHD Arachis hypogaea HOM05D007434 ORTHO05D009541 3.5e-06 55.1 88 39.8
Manes.13G126400 Manihot esculenta HOM05D007434 ORTHO05D009541 3.5e-06 55.1 91 35.2
CANSAT01G1652 Cannabis sativa HOM05D007434 ORTHO05D009541 4.5e-06 54.7 99 35.4
Migut.H00450 Erythranthe guttata HOM05D018578 ORTHO05D020597 4.5e-06 54.7 93 36.6
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 4.5e-06 54.7 121 33.9
Prupe.7G136100 Prunus persica HOM05D007434 ORTHO05D013638 4.5e-06 54.7 94 37.2
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 5.9e-06 54.3 95 35.8
Migut.H00448 Erythranthe guttata HOM05D028002 ORTHO05D009966 5.9e-06 54.3 94 35.1


User provided reference genes

Program Settings