Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 2350.1 1179 100.0
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 2184.1 1160 94.8
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 1966.8 1173 85.4
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 1834.3 1170 80.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1135.6 1195 52.5
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1133.2 1194 53.2
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1117.1 1205 50.5
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1101.7 1200 50.9
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1097.0 1204 50.7
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1080.9 1220 48.6
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 5.2e-309 1064.7 1177 49.7
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 2.0e-308 1062.8 1209 48.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 7.5e-308 1060.8 1197 49.0
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 2.8e-307 1058.9 1220 48.8
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 8.5e-304 1047.3 1188 49.9
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.3e-299 1033.5 1234 48.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.7e-297 1025.8 1222 48.3
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.1e-294 1016.1 1191 48.4
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 8.0e-294 1014.2 1215 47.7
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.0e-293 1013.8 1221 48.0
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.4e-293 1013.4 1223 47.7
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 1.4e-293 1013.4 1225 48.0
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 9.8e-292 1007.3 1214 47.9
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 1.1e-290 1003.8 1210 48.1
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 3.1e-290 1002.3 1207 47.4
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.4e-290 1001.5 1216 47.2
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.0e-290 1001.1 1214 47.4
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.0e-289 999.6 1242 47.2
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 2.7e-289 999.2 1215 47.2
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 6.1e-286 988.0 1212 46.9
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 7.5e-284 981.1 1190 47.1
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 3.6e-278 962.2 1193 46.8
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 6.2e-278 961.4 1182 47.0
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.4e-277 960.3 1154 48.9
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.6e-276 956.1 1215 44.7
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 3.7e-275 952.2 1221 44.7
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.5e-271 939.5 1206 45.0
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 8.1e-270 934.5 1222 45.8
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.6e-268 929.5 1206 44.1
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 7.1e-266 921.4 1207 44.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 3.9e-264 915.6 1339 40.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.7e-262 908.7 1181 44.8
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.2e-259 899.8 1202 43.3
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.4e-258 896.3 1211 44.8
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.2e-258 896.0 1209 42.9
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.1e-255 887.5 1155 44.0
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 5.6e-255 885.2 1198 43.2
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 9.6e-255 884.4 1208 43.1
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.2e-254 884.0 1207 42.3
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 8.1e-254 881.3 1188 43.5
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 6.9e-253 878.2 1189 43.9
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.2e-252 877.5 1210 42.7
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.5e-252 877.1 1179 44.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 2.0e-252 876.7 1200 43.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 6.0e-249 865.1 1131 43.8
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 5.1e-248 862.1 1213 42.5
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 8.7e-248 861.3 1214 42.3
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.1e-247 860.9 1170 42.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.1e-247 860.9 1175 42.8
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.8e-246 856.3 1214 42.5
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 4.8e-246 855.5 1188 43.2
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 1.8e-245 853.6 1203 42.1
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 6.9e-245 851.7 1184 43.1
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.0e-240 837.8 1170 43.8
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.1e-239 834.3 1228 41.9
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.9e-239 833.6 1177 42.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 2.1e-238 830.1 1213 41.8
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 5.8e-236 822.0 1143 42.3
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 3.9e-232 809.3 1073 44.5
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 7.4e-231 805.1 1207 41.7
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 3.2e-226 789.6 1169 40.7
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 7.2e-218 761.9 1156 39.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.3e-211 741.1 1157 40.4
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 8.5e-203 711.8 1176 40.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.0e-200 703.4 1155 38.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 2.6e-199 700.3 1179 38.3
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.3e-198 698.0 1192 38.8
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.1e-197 693.3 1039 41.4
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 6.1e-193 679.1 1117 38.7
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 7.5e-191 672.2 1177 37.7
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.6e-188 664.5 1133 38.5
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.4e-183 646.4 1155 37.6
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.4e-176 624.8 985 40.6
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 9.8e-175 618.6 1163 36.3
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.2e-174 617.5 695 51.4
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.3e-170 603.2 702 49.6
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 4.7e-169 599.7 1154 35.8
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 2.3e-168 597.4 658 51.4
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.2e-166 590.9 1087 37.0
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 5.4e-165 586.3 1133 35.5
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 3.9e-163 580.1 1157 34.0
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 3.3e-162 577.0 1156 35.6
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 6.6e-155 552.7 687 46.7
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 2.3e-152 544.3 1137 34.6
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.1e-136 490.7 755 40.5
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.4e-133 481.9 703 44.5
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 8.7e-131 472.6 758 39.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.1e-117 429.1 700 41.7
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.0e-115 422.5 489 46.4
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 7.4e-114 416.4 517 43.3
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 6.3e-105 386.7 429 46.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 8.5e-102 376.3 598 37.3
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.4e-96 359.0 659 39.9
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 6.5e-94 350.1 368 51.6
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 7.2e-93 346.7 625 40.0
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.0e-91 342.8 674 37.8
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.8e-81 308.1 1061 27.7
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.9e-77 295.4 794 28.3
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.9e-63 247.3 338 39.9
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.5e-61 240.7 435 35.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 5.4e-56 224.2 941 25.8
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.1e-43 181.8 291 38.5
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.1e-40 173.3 514 33.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.5e-39 168.3 266 39.5
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 5.2e-35 154.5 503 31.6
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.4e-26 125.2 262 28.2
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 3.8e-25 121.7 136 50.0
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.6e-23 114.8 448 24.3
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 5.1e-22 111.3 392 25.3
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.3e-21 108.6 435 29.9
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.6e-20 106.3 520 28.5
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 8.1e-20 104.0 487 29.0
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.1e-19 103.6 487 29.0
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 4.4e-18 98.2 515 26.0
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 2.2e-17 95.9 488 27.7
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.9e-17 94.7 295 34.2
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.9e-17 94.7 295 34.2
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.7e-15 89.0 480 28.5
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.7e-15 89.0 480 28.5
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.3e-14 86.7 304 25.0
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 1.9e-13 82.8 106 36.8
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 7.3e-13 80.9 511 25.0
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 9.6e-13 80.5 275 26.2
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.1e-12 79.3 443 22.3
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 4.0e-11 75.1 80 47.5
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 5.3e-11 74.7 494 23.1
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 6.9e-11 74.3 163 30.7
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 1.7e-09 69.7 491 26.3
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 9.3e-08 63.9 99 41.4


User provided reference genes

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