Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 3.0e-125 451.8 221 100.0
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 6.6e-125 450.7 221 99.5
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.1e-124 449.9 221 99.1
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 3.2e-111 405.2 221 90.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 5.3e-106 387.9 221 83.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 8.4e-104 380.6 221 82.8
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.2e-102 376.7 221 83.3
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.8e-101 372.9 221 82.8
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 80.5
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 81.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.9e-101 371.7 221 81.0
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 81.9
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 80.5
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 81.0
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 8.7e-101 370.5 222 80.6
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.9e-100 369.4 221 80.1
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.5e-100 369.0 221 80.1
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.5e-100 369.0 221 81.9
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 3.3e-100 368.6 221 79.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 5.6e-100 367.9 221 81.4
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.3e-99 366.7 221 81.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.1e-99 365.9 221 80.5
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 4.8e-99 364.8 221 78.7
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 4.8e-99 364.8 221 80.1
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 8.1e-99 364.0 221 78.7
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 8.1e-99 364.0 221 80.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 8.1e-99 364.0 222 79.3
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.1e-98 363.6 222 79.3
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.4e-98 363.2 222 78.8
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.1e-98 362.1 221 79.6
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 3.1e-98 362.1 221 78.7
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.0e-98 361.7 221 81.0
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.3e-98 361.3 222 78.8
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.9e-98 360.9 239 75.3
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.0e-98 360.5 223 79.4
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.2e-96 355.9 221 78.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 77.8
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 76.0
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 3.8e-96 355.1 221 77.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 8.4e-96 354.0 221 77.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.4e-95 353.2 221 77.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.1e-95 350.9 221 76.9
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 7.1e-95 350.9 221 77.4
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 7.1e-95 350.9 221 77.4
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 9.3e-95 350.5 221 77.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 9.3e-95 350.5 221 76.0
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.2e-94 350.1 221 76.9
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.2e-94 350.1 221 77.8
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.6e-94 349.7 221 76.0
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.1e-94 349.4 221 77.8
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.5e-94 348.6 221 77.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 4.6e-94 348.2 221 76.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 7.9e-94 347.4 221 76.0
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.9e-94 347.4 221 75.6
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 7.9e-94 347.4 221 76.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.0e-93 347.1 221 75.6
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 76.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 76.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 76.0
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 77.4
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 6.7e-93 344.4 221 73.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.1e-92 343.6 234 72.6
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.5e-92 343.2 221 76.0
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 2.5e-92 342.4 221 75.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 8.2e-91 337.4 221 74.2
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-90 337.0 222 75.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.8e-90 336.3 221 74.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.5e-89 333.2 197 80.7
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.6e-89 332.4 221 74.7
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 7.6e-89 330.9 320 56.6
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.0e-88 330.5 228 71.1
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.0e-88 330.5 223 71.3
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.1e-87 327.0 213 75.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.1e-87 327.0 222 71.2
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 9.3e-87 323.9 200 78.5
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.6e-86 323.2 222 72.5
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-86 322.8 223 73.1
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-86 322.8 222 73.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-86 322.8 223 73.1
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.7e-86 322.4 195 77.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.7e-86 322.4 195 78.5
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.6e-86 322.0 195 79.0
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.9e-86 320.9 195 77.4
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 5.1e-85 318.2 224 72.8
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 5.1e-85 318.2 222 71.6
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.7e-85 317.8 222 72.5
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.1e-84 317.0 222 71.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.5e-84 315.8 222 71.6
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-84 315.8 222 71.6
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.4e-84 314.3 199 74.9
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 9.7e-84 313.9 212 72.2
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 9.7e-84 313.9 199 76.4
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.7e-83 312.0 222 70.7
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 8.2e-83 310.8 222 70.3
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-82 310.5 195 74.4
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.4e-82 309.3 196 74.5
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 9.0e-82 307.4 222 70.3
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-81 307.0 195 73.8
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.9e-81 304.7 301 54.8
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.0e-80 303.9 195 74.9
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.0e-80 303.9 223 67.7
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.0e-80 303.9 223 67.7
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.3e-80 303.5 221 66.1
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.9e-80 302.4 195 75.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.2e-79 298.9 206 71.4
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 9.4e-79 297.4 198 73.2
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.4e-77 293.5 222 67.6
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.3e-77 292.7 211 70.1
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.3e-75 284.6 181 75.1
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.1e-74 283.9 290 53.4
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.2e-73 280.4 194 69.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.5e-73 280.0 224 62.5
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.0e-72 277.3 221 61.5
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 6.5e-72 274.6 215 62.3
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.9e-71 273.1 221 61.5
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.2e-71 271.9 179 73.7
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 5.5e-71 271.6 215 60.9
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 7.2e-71 271.2 227 60.8
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.2e-70 270.4 225 63.1
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-70 270.4 225 63.1
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.9e-69 265.4 220 63.2
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.9e-69 265.4 164 78.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.2e-67 259.6 173 71.1
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 6.3e-67 258.1 221 59.3
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.1e-66 257.3 170 72.4
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.5e-63 246.1 159 74.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.7e-62 242.7 224 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.3e-61 239.6 197 60.9
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 4.4e-60 235.3 222 52.3
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 7.5e-60 234.6 195 60.0
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.7e-60 234.2 170 67.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.5e-57 225.7 197 59.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 6.5e-48 194.9 221 47.1
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.2e-47 192.6 163 58.3
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.3e-45 186.4 184 54.3
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.2e-43 179.9 149 59.1
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 3.1e-42 176.0 93 87.1
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 3.4e-36 156.0 250 41.6
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 9.8e-36 154.5 223 37.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 7.0e-34 148.3 101 70.3
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.3e-32 144.1 244 36.1
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.5e-31 140.6 84 81.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.3e-29 133.3 220 36.4
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.2e-28 131.0 84 71.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.5e-25 119.4 142 45.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.9e-21 104.8 81 63.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.1e-18 97.8 100 50.0
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 6.0e-09 65.5 205 23.9
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.3e-08 63.5 144 37.5


User provided reference genes

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